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Platform GPL20668 Query DataSets for GPL20668
Status Public on Jul 07, 2015
Title Ncode Mus musculus Non-coding array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Invitrogen
Manufacture protocol This array targets 10,802 putative long noncoding RNAs and 25,179 coding RNA transcripts.
 
 
Submission date Jul 07, 2015
Last update date Jul 07, 2015
Contact name Sagar S Damle
E-mail(s) sdamle@ionisph.com
Organization name Ionis Pharmaceuticals
Street address 2855 Gazelle Ct
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Samples (31) GSM1811354, GSM1811355, GSM1811356, GSM1811357, GSM1811358, GSM1811359 
Series (3)
GSE70343 Long Noncoding RNA Inhibits Hepatocyte Proliferation during Liver Regeneration
GSE70593 Gene expression profiling of mouse liver regeneration after PHx
GSE100645 Differentially expressed non-coding RNAs in mouse islets during pregnancy

Data table header descriptions
ID
Target_ID
GB_ACC
SPOT_ID
Feature
Gene Name
GenBank Accession
Ensembl Gene
UniGene
EntrezGene
RefseqRNA
Description
Chrom
Start
End
Strand
SEQUENCE

Data table
ID Target_ID GB_ACC SPOT_ID Feature Gene Name GenBank Accession Ensembl Gene UniGene EntrezGene RefseqRNA Description Chrom Start End Strand SEQUENCE
IVGNm00001 AB029144 AB029144 mRNA Psmd4 AB029144 Mm.2261 19185 "Proteasome (prosome, macropain) 26S subunit, non-ATPase, 4" chr3 95120158 95120378 - GTGAATGTTGACATCATTAATTTTGGGGAAGAGGAGGTGAACACAGAGAAGCTGACAGCC
IVGNm00002 AB081756 AB081756 mRNA Bclp2 AB081756 ENSMUSG00000043873 Mm.39224 229687 NM_001080816.1 Chitinase like protein 2 chr3 106146133 106146280 - TATGATAATGTCAAGAGTTTTCGAATCAAGCTGAATGGCTTAAACAGAACAACCTGGGAG
IVGNm00003 AB093243 AB093243 mRNA Zfp292 AB093243 ENSMUSG00000039967 Mm.38193 30046 Zinc finger protein 292 chr4 34994534 34994594 - GGTGAAAAGGATGAGATGGATGAGTTAACAGAATTATTTATTACAAAGTTAATAAATGAA
IVGNm00004 AB108673 AB108673 mRNA Sox2 AB108673 ENSMUSG00000074637 Mm.65396 20674 NM_011443.3 SRY-box containing gene 2 chr3 34842312 34842372 + AAAACCAAGACGCTCATGAAGAAGGATAAGTACACGCTTCCCGGAGGCTTGCTGGCCCCC
IVGNm00005 AF076623 AF076623 mRNA AF076623 chr3 88060771 88061376 + AGAAGTTCCCAGGCTTCTCTTGGCTTTCCTGACCCCAAGCTGAAGCTGCATTTCCTTGGG
IVGNm00006 AF363737 AF363737 mRNA Ccbl2 AF363737 Mm.289643 229905 Cysteine conjugate-beta lyase 2 chr3 142663445 142663597 + TTAAATACTCCACACAACCCCCTCGGCAAGGTGTATACCAGACAGGAGCTGCAAGTCATT
IVGNm00007 AF534879 AF534879 mRNA BC028528 AF534879 ENSMUSG00000038543 Mm.89556 229600 NM_153513.2 CDNA sequence BC028528 chr3 95973670 95974290 - ACTCCGTGTTTGAGTCAGAGGATAGGTTGAACAGGTTGAATAAGGAGGTAACAACAACAG
IVGNm00008 AK002319 AK002319 mRNA Tcea3 AK002319 ENSMUSG00000001604 Mm.112 21401 NM_011542.1 "Transcription elongation factor A (SII), 3" chr4 135543424 135545748 + GTGCAAGAAGAAGAATTGTACCTATAACCAGGTGCAGACACGCAGTGCTGATGAGCCCAT
IVGNm00009 AK002733 AK002733 ncRNA 0610031O16Rik AK002733 Mm.441136 68369 RIKEN cDNA 0610031O16 gene chr3 138175068 138176903 - AGAGTCCCAAACAGCTATCTTCTTCTGGGGACAACAAAGAGAGGTGGCTCAGCATGCAAG
IVGNm00010 AK002922 AK002922 mRNA AK002922 chr4 33708018 33732793 + AAATGGATGGACTTATTTTTCAGCCTATTGGAAAATACAAGCCTGGTCGATGTGATGACA
IVGNm00011 AK003052 AK003052 mRNA Sdhb AK003052 Mm.246965 67680 "Succinate dehydrogenase complex, subunit B, iron sulfur (Ip)" chr4 140245067 140245771 + TATGTATGTGATCAAGGATCTAGTCCCTGATTTGAGTAACTTCTACGCACAATACAAATC
IVGNm00012 AK003200 AK003200 mRNA Fbxw7 AK003200 Mm.196475 50754 "F-box and WD-40 domain protein 7, archipelago homolog (Drosophila)" chr3 85065039 85065099 + TAAAGGGATTGTGTCTATGGTTTGATTCACTTAGAAATTTTATTTTCTTATAACTTAAGT
IVGNm00013 AK003276 AK003276 mRNA Ube2q1 AK003276 ENSMUSG00000042572 Mm.41438 70093 NM_027315.3 Ubiquitin-conjugating enzyme E2Q (putative) 1 chr3 89869834 89869894 + ATGTATTTTGTAATGTATTTTTCTCATCTACCAAAGGATGAATCAAATAAAGTTATTTAA
IVGNm00014 AK003599 AK003599 mRNA Npnt AK003599 ENSMUSG00000040998 Mm.279310 114249 NM_001029836.1 NM_033525.2 Nephronectin chr3 132820455 132820515 - AGTCAACTTTTCTCCTTAGCATTTCTCACCCTTCTGATTAAGTAATCAAAATATTTTCTG
IVGNm00015 AK003731 AK003731 ncRNA 1110015O18Rik AK003731 Mm.75172 68516 RIKEN cDNA 1110015O18 gene chr3 4797896 4797956 + GTTTAAAATGAAATTTTACATAGTATTCTAGAGTTATATAAATAGATTGTTACAGATATT
IVGNm00016 AK003775 AK003775 ncRNA 1110018F16Rik AK003775 Mm.392730 68594 RIKEN cDNA 1110018F16 gene chr3 137853866 137853926 + GAATGATTTACAAATTTTTGTCTTTCAGTCTCTGTAATTTATCTCAACATATGAATAAAA
IVGNm00017 AK003807 AK003807 mRNA Ivl AK003807 ENSMUSG00000049128 Mm.207365 16447 NM_008412.2 Involucrin chr3 92656304 92656364 - TCCTAATGTTGTGGCAGAATTGTGAATAGGTGTAATGTCTAATAAATCCTAAAAACCCTG
IVGNm00018 AK004027 AK004027 mRNA 1110032E23Rik AK004027 Mm.427274 68659 RIKEN cDNA 1110032E23 gene chr3 80028861 80028921 + AACATGGATAGAGAGCATATGGCAACTAATTAGGCAAAATTAAGTCTCAACTAATTCTCC
IVGNm00019 AK004070 AK004070 ncRNA Hrnr AK004070 ENSMUSG00000041991 Mm.208047 68723 Hornerin chr3 93418382 93418442 + CTATCTAAAAGATTATTATTTAGTTAAGAATGATGCTAAAGCTAAGCTTATAGTTTTAAA
IVGNm00020 AK004088 AK004088 ncRNA Ahcyl1 AK004088 ENSMUSG00000027893 Mm.220328 229709 NM_145542.3 S-adenosylhomocysteine hydrolase-like 1 chr3 107791225 107791285 - CCAACTTGGGAGGAAAATATTCATTTTGTATTGAATGATTTTTAATGAATGCAATATTAA

Total number of rows: 35981

Table truncated, full table size 6709 Kbytes.




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