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| Status |
Public on Jun 16, 2019 |
| Title |
Transcriptome alterations in porcine adipocytes downstream of TLR-2, -3 and -4 ligation |
| Organism |
Sus scrofa |
| Experiment type |
Expression profiling by array
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| Summary |
Adipocytes are functionally the most important cell type in adipose tissue, which play a key role in systemic metabolism and inflammation. Toll-like receptors (TLRs) are important innate immune receptors involve in the early recognition of infection flowed by inflammatory responses. We recently reported that nine members of TLR (1-9) are expressed in the porcine adipocyte. To further development of our in vitro adipocyte model for evaluating potential immunobiotics, herein we characterized the global transcriptome alterations in porcine mature adipocytes (PMA) following stimulation with Pam3csk4, Poly(I:C) and LPS for 12 h, as a specific ligand for TLR2, TLR3 and TLR4, respectively. Analysis of microarray data revealed that 530 (218 up, 312 down), 520 (245 up, 275 down) and 525 (239 up, 286 down) genes were differentially expressed in PMA following stimulation with Pam3csk4, poly (I:C) and LPS stimulation, respectively. Gene ontology classification revealed that differentially expressed genes (DEGs) are involved in several biological process including immune response, inflammatory responses, cytokine-mediated signaling, chemokine-mediated signaling. The accurately annotated genes were organized into two: immune response related genes (cytokine, chemokine, complement factors, adhesion molecules and signal transduction), and genes involved with metabolic and endocrine function (hormones and receptors, growth factors and lipogenic). We inferred protein interaction networks from common DEGs and found that EGR1, NOTCH, NOS2, TNFAIP3, TRAF3IP1, INSR, CXCR4, PPARA, MAPK10 and C3 are the major hub genes of TLR induced transcriptional network of porcine adipocyte. Potential hubs of protein interaction network also exhibited higher centrality estimates in the Gene-Transcription factor interaction network. Expressions of the important genes were also measured by qRT-PCR, confirming the microarray results. Our results provide new insights of transcriptome modifications of adipocytes association with immune response, metabolic and endocrine function.
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| Overall design |
TLRs induced gene expression in porcine adipocyte was measured after 12 h exposure of Pam3csk, Poly (I:C) and LPS as a ligand for TLR2, TLR3 and TLR4, respectively. Single sample was generated in each of three cases along with a non-stimulated control.
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| Contributor(s) |
Manami I, Aminul I, Leonardo A, Julio V, Haruki K, Kitazawa H |
| Citation(s) |
31191544 |
| Submission date |
Dec 20, 2018 |
| Last update date |
Jun 16, 2019 |
| Contact name |
Haruki Kitazawa |
| E-mail(s) |
haruki.kitazawa.c7@tohoku.ac.jp
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| Phone |
+81-22-757-4373
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| Organization name |
Tohoku University
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| Street address |
468-1 Aramaki Aza Aoba, Aoba-ku,, Sendai
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| City |
Sendai |
| State/province |
Miyagi |
| ZIP/Postal code |
980-0845 |
| Country |
Japan |
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| Platforms (1) |
| GPL15007 |
Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Feature Number version) |
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| Samples (4)
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| GSM3523344 |
PorcineMatureAdipocyte_12hr_Without_stimulation_rep1 |
| GSM3523345 |
PorcineMatureAdipocyte_12hr_Pam3csk4_stimulation_rep1 |
| GSM3523346 |
PorcineMatureAdipocyte_12hr_PolyIC_stimulation_rep1 |
| GSM3523347 |
PorcineMatureAdipocyte_12hr_LPS_stimulation_rep1 |
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| Relations |
| BioProject |
PRJNA510941 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE124171_RAW.tar |
31.2 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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