|
| Status |
Public on Nov 18, 2021 |
| Title |
Epigenome analysis of intracranial mesenchymal tumors with FET-CREB fusions |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
|
| Summary |
Genome-wide DNA methylation profiling of 20 intracranial mesenchymal tumors with FET-CREB fusions encompassing both intracranial myxoid mesenchymal tumors and intracranial angiomatoid fibrous histiocytoma-like neoplasms. The Illumina Infinium EPIC 850k Human DNA Methylation Beadchip was used to obtain DNA methylation profiles across approximately 850,000 CpG sites of genomic DNA extracted from formalin-fixed, paraffin-embedded tumor tissue of 20 intracranial mesenchymal tumors with FET-CREB fusions.
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| |
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| Overall design |
Bisulfite converted genomic DNA extracted from the 20 tumor samples was hybridized to Illumina Infinium EPIC 850k Human DNA Methylation Beadchip
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| |
|
| Contributor(s) |
Solomon DA |
| Citation(s) |
34821426 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| DP5 OD021403 |
Cohesin gene mutations in tumorigenesis |
University of California San Francisco |
David A. Solomon |
|
| Submission date |
Jan 17, 2021 |
| Last update date |
Nov 29, 2021 |
| Contact name |
David A. Solomon |
| E-mail(s) |
david.solomon@ucsf.edu
|
| Organization name |
University of California, San Francisco
|
| Department |
Pathology
|
| Street address |
513 Parnassus Ave, HSW 451
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143 |
| Country |
USA |
| |
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| Platforms (1) |
|
| Samples (20)
|
|
| Relations |
| BioProject |
PRJNA692742 |
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