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Series GSE18753 Query DataSets for GSE18753
Status Public on Oct 28, 2009
Title MOLECULAR MECHANISMS ASSOCIATED WITH MARKERS OF HEPATOCARCINOGENICITY DURING A 14 DAY DIETARY STUDY IN MALE FISCHER RAT
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary To investigate the molecular mechanisms associated with initial dose-related events that are linked to the development of liver tumours: liver growth; cell proliferation; changes in histopathology such as hypertrophy
 
Overall design We selected dose levels of phenobarbital to give a carcinogenic (1000ppm) and two non-carcinogenic doses (50 and 500ppm). This also gave two doses that increased liver weights (500 and 1000ppm) and one that did not (50ppm). Alterations to liver growth and proliferation are complete after 14 days of dietary treatment and so we chose intermediate time points of 1,3 7 and 14 days of treatement. Small sections of the left lateral lobe of the liver were processed to give three biological replicates selected from the 5 treated animals in each group, total RNA purified and mRNA levels measured using Affymetrix Rat Genome 230 v2 microarrays. In addition we also measured a braod range of standard histopathological, clincal chemsitry and metabolomic endpoints.
 
Contributor(s) Currie RA, Waterman C, Griffin J, Wright J
Citation(s) 20053287
Submission date Oct 27, 2009
Last update date Jul 31, 2017
Contact name Richard Currie
E-mail(s) richard.currie@syngenta.com
Organization name Syngenta
Street address Jealott's Hill
City Bracknell
ZIP/Postal code RG42 6EY
Country United Kingdom
 
Platforms (1)
GPL1355 [Rat230_2] Affymetrix Rat Genome 230 2.0 Array
Samples (48)
GSM465599 liver_1day_control_replicate1
GSM465600 liver_1day_control_replicate2
GSM465601 liver_1day_control_replicate3
Relations
BioProject PRJNA121671

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE18753.txt.gz 191.8 Kb (ftp)(http) TXT
GSE18753_RAW.tar 110.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
Processed data are available on Series record

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