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GEO accession:
Sample GSM100888
Query DataSets for GSM100888
Status
Public on May 26, 2006
Title
Acromegaly case A2
Sample type
RNA
Source name
blood
Organism
Homo sapiens
Characteristics
peripheral blood
Extracted molecule
total RNA
Extraction protocol
Total RNA extracted from whole blood with PAXgene Blood RNA Kit (PreAnalytiX) and concentrated with RNeasy MinElute Cleanup columns (Qiagen).
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
peripheral blood
Data processing
Affymetrix GeneChip® Operating Software (GCOS)
Submission date
Mar 16, 2006
Last update date
Aug 28, 2018
Contact name
Antti Kokko
Organization name
University of Helsinki
Department
Dept of Medical Genetics
Lab
Tumorigenesis group
Street address
POBOX 63 (Haartmaninkatu 8)
City
Helsinki
ZIP/Postal code
00014 University of Helsinki
Country
Finland
Platform ID
GPL570
Series (1)
GSE4488
Expression data from whole blood
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
GCOS-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
146
P
0.000509
AFFX-BioB-M_at
549.6
P
0.000044
AFFX-BioB-3_at
274.1
P
0.00034
AFFX-BioC-5_at
711.1
P
0.000052
AFFX-BioC-3_at
1113.1
P
0.000044
AFFX-BioDn-5_at
1063.5
P
0.00006
AFFX-BioDn-3_at
3160.8
P
0.000044
AFFX-CreX-5_at
9046.8
P
0.000052
AFFX-CreX-3_at
13740.6
P
0.000044
AFFX-DapX-5_at
564.9
P
0.000044
AFFX-DapX-M_at
1337.8
P
0.000297
AFFX-DapX-3_at
1424.6
P
0.000052
AFFX-LysX-5_at
57.1
P
0.000581
AFFX-LysX-M_at
120.7
P
0.001593
AFFX-LysX-3_at
257.5
P
0.000044
AFFX-PheX-5_at
85.6
P
0.000081
AFFX-PheX-M_at
150.8
P
0.000169
AFFX-PheX-3_at
140.7
P
0.00039
AFFX-ThrX-5_at
164.1
P
0.000147
AFFX-ThrX-M_at
178.7
P
0.000127
Total number of rows:
54675
Table truncated, full table size
1410 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM100888.CEL.gz
8.0 Mb
(ftp)
(http)
CEL
GSM100888.EXP.gz
364 b
(ftp)
(http)
EXP
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