NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1014459 Query DataSets for GSM1014459
Status Public on Oct 01, 2013
Title hepatoblast derived tumor [HB4]
Sample type RNA
 
Source name HB4
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: hepatoblast derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 14
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 937.03 0
ILMN_2721178 214.7795 0
ILMN_3033922 484.5029 0
ILMN_3092673 1949.015 0
ILMN_2816356 74.39941 0
ILMN_2808939 737.5339 0
ILMN_2634564 306.5204 0
ILMN_2737647 6.913707 0.1917293
ILMN_2734484 147.8838 0
ILMN_2952292 40.2598 0.006265664
ILMN_2699078 1.038038 0.3972431
ILMN_1213681 211.434 0
ILMN_2735413 39.29222 0.006265664
ILMN_2735415 94.39979 0
ILMN_2891688 210.3354 0
ILMN_2637698 1409.394 0
ILMN_2674228 121.7487 0
ILMN_2601546 12.55947 0.10401
ILMN_1230831 -6.69978 0.7957394
ILMN_2848071 9.232526 0.1491228

Total number of rows: 25697

Table truncated, full table size 740 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap