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GEO accession:
Sample GSM106399
Query DataSets for GSM106399
Status
Public on Oct 24, 2006
Title
EdTx study_macrophages_PA-treated_3h_rep1
Sample type
RNA
Source name
Protective antigen-treated macrophages
Organism
Mus musculus
Characteristics
RAW 264.7 macrophages
Extracted molecule
total RNA
Label
Affymetrix
Description
RAW 264.7 macrophages were treated with protective antigen (2.5 µg/ml) for 3 hr - used as a negative control to detect transcriptional responses to the binding moiety alone.
Data processing
GCOS
Submission date
Apr 24, 2006
Last update date
Apr 26, 2006
Contact name
Ashok K Chopra
E-mail(s)
achopra@utmb.edu
Phone
409-747-0573
Fax
409-747-6869
Organization name
University of Texas Medical Branch
Department
Microbiology & Immunology
Street address
301 University Blvd.
City
Galveston
State/province
TX
ZIP/Postal code
77555
Country
USA
Platform ID
GPL1261
Series (1)
GSE4712
Edema Toxin-treated Macrophage Study
Data table header descriptions
ID_REF
VALUE
Normalized signal value
ABS_CALL
Presence value (absent, marginally present, ot present)
DETECTION P-VALUE
Presence statistic
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
437.9
P
0.002023
AFFX-BioB-M_at
638.7
P
0.000754
AFFX-BioB-3_at
378.9
P
0.030976
AFFX-BioC-5_at
780.9
P
0.00034
AFFX-BioC-3_at
795
P
0.000044
AFFX-BioDn-5_at
2309.9
P
0.000044
AFFX-BioDn-3_at
7995.5
P
0.000297
AFFX-CreX-5_at
12705.9
P
0.000052
AFFX-CreX-3_at
16255
P
0.000044
AFFX-DapX-5_at
9.3
A
0.852061
AFFX-DapX-M_at
28.2
A
0.559354
AFFX-DapX-3_at
13.4
A
0.686277
AFFX-LysX-5_at
1607.2
P
0.000052
AFFX-LysX-M_at
2011.1
P
0.000044
AFFX-LysX-3_at
3997.9
P
0.000044
AFFX-PheX-5_at
6595.8
P
0.000044
AFFX-PheX-M_at
8723.7
P
0.000044
AFFX-PheX-3_at
6313.1
P
0.000044
AFFX-ThrX-5_at
281.8
P
0.033677
AFFX-ThrX-M_at
195.8
P
0.015183
Total number of rows:
45101
Table truncated, full table size
1223 Kbytes
.
Supplementary data files not provided
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