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Sample GSM1068372 Query DataSets for GSM1068372
Status Public on May 01, 2013
Title ob_48 weeks_non-fasted_rep_3 [muscle]
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 48 weeks
fasting status: non-fasted
strain: B6.V-Lep ob/J
diet: D12450B
tissue: muscle
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 27M
Data processing The data were quantile normalised using lumi library in R
 
Submission date Jan 23, 2013
Last update date May 01, 2013
Contact name Krzysztof Goryca
Organization name Uniwersytet Warszawski
Department CeNT
Street address Banacha 2c
City Warszawa
ZIP/Postal code 02-097
Country Poland
 
Platform ID GPL6885
Series (1)
GSE43691 Hepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 5261.689583 0
ILMN_2721178 1216.94375 0
ILMN_3033922 763.1270833 0
ILMN_3092673 2636.485417 0
ILMN_2816356 103.25625 0.00251
ILMN_2808939 122.4260417 0
ILMN_2634564 478.865625 0
ILMN_2737647 73.09375 0.0802
ILMN_2734484 683.7739583 0
ILMN_2952292 87.55416667 0.01378
ILMN_2699078 53.396875 0.73434
ILMN_1213681 552.2864583 0
ILMN_2735413 64.85833333 0.19048
ILMN_2735415 69.028125 0.12155
ILMN_2891688 738.1645833 0
ILMN_2637698 564.19375 0
ILMN_2674228 234.3770833 0
ILMN_2601546 72.57291667 0.08271
ILMN_1230831 63.00625 0.23935
ILMN_2848071 67.41875 0.1391

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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