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Sample GSM109828 Query DataSets for GSM109828
Status Public on May 24, 2006
Title endometrium G98A
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Mid secretory phase MSE
Age: 30 Diagnostics: Pipelle endometrial biopsy-nml volunteer Caucasian
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1413.3734 0.2770267
1053_at 105.151 0.87690485
117_at 78.65516 0.69012433
121_at 3844.0361 0.15842296
1255_g_at 13.855022 0.7762607
1294_at 186.63014 0.96477437
1316_at 90.52087 0.8290961
1320_at 50.746128 0.73216677
1405_i_at 309.70404 0.022654487
1431_at 20.373423 0.72210664
1438_at 115.50737 0.46393275
1487_at 242.41049 0.36750555
1494_f_at 110.20482 0.9097547
1598_g_at 903.1784 0.5936403
160020_at 435.90945 0.39093763
1729_at 354.74405 0.33518556
1773_at 64.592354 0.97783536
177_at 35.77107 0.81075054
179_at 498.79178 0.77654564
1861_at 114.79423 0.7609128

Total number of rows: 54675

Table truncated, full table size 1650 Kbytes.




Supplementary file Size Download File type/resource
GSM109828_G98A.CEL.gz 8.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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