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Sample GSM1124851 Query DataSets for GSM1124851
Status Public on Oct 20, 2013
Title Insm1 mutant #1
Sample type RNA
 
Source name Insm1 mutant #1_pituitary gland
Organism Mus musculus
Characteristics strain: C57/BL6;129Ola mixed
genotype/variation: Insm1 -/-
developmental stage: embryo
age: E17.5
tissue: pituitary gland
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina TotalPrep RNA Amplif Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 5003391025_a
replicate 1
Data processing The data were normalised using quantile normalisation with Illumina Genome Studio
 
Submission date Apr 17, 2013
Last update date Oct 20, 2013
Contact name Jochen Welcker
E-mail(s) jochen.welcker@gmx.de
Organization name MDC Berlin
Street address Robert-Rössle-Str. 10
City Berlin
ZIP/Postal code 13125
Country Germany
 
Platform ID GPL6885
Series (1)
GSE46139 Genome-wide analysis of E17.5 pituitary gland gene expression of control and Insm1 mutant mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal [AVG_Signal]
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 1653.874 0
ILMN_2707227 1.050815 0.3834586
ILMN_2896528 7063.054 0
ILMN_2721178 1165.403 0
ILMN_1227723 336.0416 0
ILMN_3033922 1298.054 0
ILMN_3092673 10439.93 0
ILMN_2730714 3704.763 0
ILMN_3162224 2465.258 0
ILMN_2816356 45.33669 0
ILMN_2808939 1139.021 0
ILMN_2634564 507.1856 0
ILMN_1216623 1106.723 0
ILMN_1215157 1369.714 0
ILMN_1228777 14.73359 0.07142857
ILMN_2737647 4.564919 0.2619048
ILMN_1216425 -7.048932 0.7794486
ILMN_2734484 1343.329 0
ILMN_2652961 0.5063395 0.3947369
ILMN_2952292 68.22242 0

Total number of rows: 25697

Table truncated, full table size 711 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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