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GEO accession:
Sample GSM1194866
Query DataSets for GSM1194866
Status
Public on Aug 15, 2013
Title
Glioma Stem Cells GSC35
Sample type
RNA
Source name
Glioma Stem Cells isolated from glioblastoma
Organism
Homo sapiens
Characteristics
cell type: Glioma Stem Cells isolated from glioblastoma
tissue: brain
Treatment protocol
none
Growth protocol
Neural basal media supplemented with bFGF and EGF
Extracted molecule
total RNA
Extraction protocol
Whole RNA extraction kit from ABI
Label
biotin
Label protocol
standard Affymetrix protocol, Performed by Expression Analysis (Durham, NC)
Hybridization protocol
standard Affymetrix protocol, Performed by Expression Analysis (Durham, NC)
Scan protocol
standard Affymetrix protocol, Performed by Expression Analysis (Durham, NC)
Data processing
Affymetrix data processed in R using a custom CDF from
http://brainarray.mbni.med.umich.edu/brainarray/Database/CustomCDF/genomic_curated_CDF.asp
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/16.0.0/ensg.download/hgu133a2hsensgcdf_16.0.0.tar.gz
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/16.0.0/ensg.download/hgu133a2hsensgcdf_16.0.0.tar.gz
Submission date
Jul 24, 2013
Last update date
Aug 15, 2013
Contact name
Brian D Vaillant
Organization name
Seton Brain and Spine Institute
Department
Neurology
Street address
1400 IH 35 Ste300
City
Austin
State/province
TX
ZIP/Postal code
78701
Country
USA
Platform ID
GPL17486
Series (2)
GSE49009
A Proneural to Mesenchymal Transition Mediated by NFkB Promotes Radiation Resistance in Glioblastoma
GSE49161
A Proneural to Mesenchymal Transition Mediated by NFkB Promotes Radiation Resistance in Glioblastoma (part 1)
Data table header descriptions
ID_REF
VALUE
log2 normalized expression data
Data table
ID_REF
VALUE
ENSG00000000003_at
11.58249213
ENSG00000000005_at
5.104138789
ENSG00000000419_at
11.82484743
ENSG00000000457_at
8.756326554
ENSG00000000460_at
8.785227005
ENSG00000000938_at
5.180025612
ENSG00000000971_at
4.763736773
ENSG00000001084_at
6.25372841
ENSG00000001167_at
9.242720593
ENSG00000001461_at
7.126819131
ENSG00000001497_at
10.25549124
ENSG00000001561_at
5.725037757
ENSG00000001617_at
7.075950585
ENSG00000001626_at
4.572999925
ENSG00000002016_at
7.521246399
ENSG00000002330_at
9.479389781
ENSG00000002549_at
11.43361523
ENSG00000002586_at
10.86259226
ENSG00000002587_at
5.872025731
ENSG00000002726_at
4.898921069
Total number of rows:
11625
Table truncated, full table size
350 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1194866_EA08072_115612_HG-U133A_2_35-PM.CEL.gz
2.0 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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