|
| Status |
Public on Jan 01, 2014 |
| Title |
EOC P125 |
| Sample type |
RNA |
| |
|
| Source name |
Ovarian tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
excluded: no
subclass: 1
age: 64
histology: Serous
figo grade: III
grade: 3
peritoneal carcinomatosis: Yes
residual tumor: No
pfs event: 0
pfs month: 48
os event: 0
os month: 48
|
| Extracted molecule |
total RNA |
| Extraction protocol |
total RNA from epithelial ovarian cancer tissues was isolated with the ABI PRISM 6100 Nucleic Acid PrepStation (Applied Biosystems) according to the manufacturer’s instructions
|
| Label |
DIG
|
| Label protocol |
Applied Biosystems Chemiluminescent RT Labeling Kit
|
| |
|
| Hybridization protocol |
Applied Biosystems Chemiluminescence Detection Kit
|
| Scan protocol |
Expression Array System Software v1.1.1
|
| Description |
Human Genome Survey Microarray V2.0 (Applied Biosystems)
|
| Data processing |
R Package ABarray 1.4.2 (Filtering flags > 5000, quantile normalization, log-2 transformation), Batch correction as follows: subtraction of the batch-specific mean from each gene, and add the overall mean.
|
| |
|
| Submission date |
Aug 19, 2013 |
| Last update date |
Jan 01, 2014 |
| Contact name |
Dietmar Pils |
| E-mail(s) |
dietmar.pils@meduniwien.ac.at
|
| Organization name |
Medical University of Vienna
|
| Department |
Dept. of Surgery
|
| Street address |
Waehringer Guertel 18-20
|
| City |
Vienna |
| ZIP/Postal code |
1090 |
| Country |
Austria |
| |
|
| Platform ID |
GPL2986 |
| Series (1) |
| GSE49997 |
Validating the Impact of a Molecular Subtype in Epithelial Ovarian Cancer (EOC) on Progression Free and Overall Survival |
|
