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Sample GSM1261757 Query DataSets for GSM1261757
Status Public on Dec 15, 2013
Title 1345-BP-2
Sample type RNA
 
Source name Men01D003
Organism Homo sapiens
Characteristics time: 3 days
treatment: MCV4
cell type: PBMC
Treatment protocol Healthy adult volunteers were randomized to be vaccinated subcutaneously with MPSV4 (Menomune®, n=13) or intramuscularly with MCV4 (MenactraTM, n=17) (Sanofi Pasteur, Swiftwater, PA), according to manufacture's recommendations.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from PBMC using Trizol (Invitrogen, 1 ml of Trizol to ~1.5 million cells) according to manufacture's recommendation.
Label biotin
Label protocol Per Affymetrix protocol
 
Hybridization protocol Per Affymetrix protocol
Scan protocol Per Affymetrix protocol
Data processing Hybridization data of all samples passed quality control and expression data were normalized by RMA R package
 
Submission date Nov 08, 2013
Last update date Dec 15, 2013
Contact name Shuzhao Li
Phone 1(404)712-2594
Organization name Emory University
Department Emory Vaccine Center
Lab Pulendran Lab
Street address 954 Gatewood Rd NE
City Atlanta
State/province GA
ZIP/Postal code 30329
Country USA
 
Platform ID GPL13158
Series (1)
GSE52245 Time Course of Young Adults Vaccinated with Meningococcal MCV4 and MPSV4 Vaccines

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_PM_s_at 4.79
1053_PM_at 6.12
117_PM_at 7.6
121_PM_at 4.32
1255_PM_g_at 2.18
1294_PM_at 7.6
1316_PM_at 5.02
1320_PM_at 2.15
1405_PM_i_at 10.5
1431_PM_at 3.45
1438_PM_at 2.44
1487_PM_at 5.5
1494_PM_f_at 2.63
1552256_PM_a_at 4.12
1552257_PM_a_at 6.43
1552258_PM_at 4.57
1552261_PM_at 2.29
1552263_PM_at 8.19
1552264_PM_a_at 8.01
1552266_PM_at 2.25

Total number of rows: 54715

Table truncated, full table size 1000 Kbytes.




Supplementary file Size Download File type/resource
GSM1261757_1345BP0002-20100511-HT-HU-U133PLUS.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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