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Sample GSM1273864 Query DataSets for GSM1273864
Status Public on Nov 24, 2014
Title HC A12-241
Sample type RNA
 
Source name Whole spinal cord homogenate - post mortem
Organism Homo sapiens
Characteristics cell type: Whole spinal cord homogenate - post mortem
phenotype: non ALS
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using mirVanaTM miRNA isolation kit (Ambion) according to the manufacturer’s protocol
Label NA
Label protocol nCounter Human miRNA Assay Kit
 
Hybridization protocol according to the manufacturer’s protocol
Scan protocol according to the manufacturer’s protocol
Data processing Data was proccessed using nSolver, normalized to Positive controls, Housekeeping genes and negative controls
 
Submission date Nov 22, 2013
Last update date Nov 24, 2014
Contact name Oleg Butovsky
E-mail(s) obutovsky@rics.bwh.harvard.edu
Phone 1-617-525-5313
Organization name Brigham and Women's Hospital, Harvard Medical School
Department Center of Neurologic Diseases
Lab Dr. Oleg Butovsky
Street address 77 Avenue Louis Pasteur, Office 614
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL17978
Series (2)
GSE52670 miRNA profile in lumbar spinal cord homogenate from healthy controls and ALS
GSE52947 Targeting miR-155 restores abnormal microglia and attenuates disease in SOD1 mice

Data table header descriptions
ID_REF
VALUE Normalized mRNA transcripts copies per 100ng of total RNA

Data table
ID_REF VALUE
hsa-let-7a-5p 13012
hsa-let-7b-5p 9345
hsa-let-7c 1157
hsa-let-7d-5p 426
hsa-let-7e-5p 417
hsa-let-7f-5p 177
hsa-miR-15a-5p 2298
hsa-miR-16-5p 355
hsa-miR-18a-5p 41
hsa-miR-19a-3p 260
hsa-miR-19b-3p 355
hsa-miR-20a-5p+hsa-miR-20b-5p 198
hsa-miR-21-5p 602
hsa-miR-22-3p 406
hsa-miR-23a-3p 2519
hsa-miR-24-3p 300
hsa-miR-25-3p 1728
hsa-miR-26a-5p 235
hsa-miR-26b-5p 841
hsa-miR-27a-3p 5

Total number of rows: 800

Table truncated, full table size 13 Kbytes.




Supplementary file Size Download File type/resource
GSM1273864_20130222_hsa_lumbar_1_01_06.RCC.gz 6.8 Kb (ftp)(http) RCC
Processed data included within Sample table

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