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Sample GSM1273870 Query DataSets for GSM1273870
Status Public on Nov 24, 2014
Title ALS 701-007
Sample type RNA
 
Source name Whole spinal cord homogenate - post mortem
Organism Homo sapiens
Characteristics cell type: Whole spinal cord homogenate - post mortem
phenotype: ALS
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using mirVanaTM miRNA isolation kit (Ambion) according to the manufacturer’s protocol
Label NA
Label protocol nCounter Human miRNA Assay Kit
 
Hybridization protocol according to the manufacturer’s protocol
Scan protocol according to the manufacturer’s protocol
Data processing Data was proccessed using nSolver, normalized to Positive controls, Housekeeping genes and negative controls
 
Submission date Nov 22, 2013
Last update date Nov 24, 2014
Contact name Oleg Butovsky
E-mail(s) obutovsky@rics.bwh.harvard.edu
Phone 1-617-525-5313
Organization name Brigham and Women's Hospital, Harvard Medical School
Department Center of Neurologic Diseases
Lab Dr. Oleg Butovsky
Street address 77 Avenue Louis Pasteur, Office 614
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL17978
Series (2)
GSE52670 miRNA profile in lumbar spinal cord homogenate from healthy controls and ALS
GSE52947 Targeting miR-155 restores abnormal microglia and attenuates disease in SOD1 mice

Data table header descriptions
ID_REF
VALUE Normalized mRNA transcripts copies per 100ng of total RNA

Data table
ID_REF VALUE
hsa-let-7a-5p 13209
hsa-let-7b-5p 5913
hsa-let-7c 803
hsa-let-7d-5p 266
hsa-let-7e-5p 524
hsa-let-7f-5p 255
hsa-miR-15a-5p 2163
hsa-miR-16-5p 415
hsa-miR-18a-5p 23
hsa-miR-19a-3p 275
hsa-miR-19b-3p 393
hsa-miR-20a-5p+hsa-miR-20b-5p 185
hsa-miR-21-5p 825
hsa-miR-22-3p 363
hsa-miR-23a-3p 2591
hsa-miR-24-3p 342
hsa-miR-25-3p 1125
hsa-miR-26a-5p 229
hsa-miR-26b-5p 905
hsa-miR-27a-3p 18

Total number of rows: 800

Table truncated, full table size 13 Kbytes.




Supplementary file Size Download File type/resource
GSM1273870_20130222_hsa_lumbar_2_01_01.RCC.gz 6.9 Kb (ftp)(http) RCC
Processed data included within Sample table

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