NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1273894 Query DataSets for GSM1273894
Status Public on Nov 24, 2014
Title HC-A12-243
Sample type RNA
 
Source name Whole spinal cord homogenate - post mortem
Organism Homo sapiens
Characteristics cell type: Whole spinal cord homogenate - post mortem
phenotype: non-ALS
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using mirVanaTM miRNA isolation kit (Ambion) according to the manufacturer’s protocol
Label NA
Label protocol nCounter® GX Human Immunology Kit
 
Hybridization protocol according to the manufacturer’s protocol
Scan protocol according to the manufacturer’s protocol
Data processing Data was proccessed using nSolver, normalized to Positive controls, Housekeeping genes and negative controls
 
Submission date Nov 22, 2013
Last update date Nov 24, 2014
Contact name Oleg Butovsky
E-mail(s) obutovsky@rics.bwh.harvard.edu
Phone 1-617-525-5313
Organization name Brigham and Women's Hospital, Harvard Medical School
Department Center of Neurologic Diseases
Lab Dr. Oleg Butovsky
Street address 77 Avenue Louis Pasteur, Office 614
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL17980
Series (2)
GSE52672 Immune gene profile in lumbar spinal cord homogenate of healthy controls and ALS
GSE52947 Targeting miR-155 restores abnormal microglia and attenuates disease in SOD1 mice

Data table header descriptions
ID_REF
VALUE Normalized mRNA transcripts copies per 100ng of total RNA

Data table
ID_REF VALUE
ADA 61
FAS 31
ATM 54
BTK 18
SERPING1 263
C2 41
C3 119
C6 19
C8B 68
CD40LG 22
GPI 138
GUSB 61
HPRT1 64
ICAM1 44
CFI 40
IL2RG 27
ITGA6 98
ITGB2 72
JAK3 37
KIT 61

Total number of rows: 526

Table truncated, full table size 4 Kbytes.




Supplementary file Size Download File type/resource
GSM1273894_20130401_lumbar_1_01_10.RCC.gz 5.6 Kb (ftp)(http) RCC
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap