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Sample GSM1277670 Query DataSets for GSM1277670
Status Public on Nov 24, 2014
Title SOD 155 -/- (1)
Sample type RNA
 
Source name Lumbar spinal cord homogenate
Organism Mus musculus
Characteristics cell type: Lumbar spinal cord homogenate
strain/genotype: Mouse -B6/SJL-mSOD1G93A-miR-155-/-
gender: female
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using mirVanaTM miRNA isolation kit (Ambion) according to the manufacturer’s protocol
Label NA
Label protocol nCounter Mouse miRNA Assay Kit
 
Hybridization protocol according to the manufacturer’s protocol
Scan protocol according to the manufacturer’s protocol
Data processing Data was proccessed using nSolver, normalized to Positive controls, Housekeeping genes and negative controls
 
Submission date Dec 02, 2013
Last update date Nov 24, 2014
Contact name Oleg Butovsky
E-mail(s) obutovsky@rics.bwh.harvard.edu
Phone 1-617-525-5313
Organization name Brigham and Women's Hospital, Harvard Medical School
Department Center of Neurologic Diseases
Lab Dr. Oleg Butovsky
Street address 77 Avenue Louis Pasteur, Office 614
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL18014
Series (2)
GSE52898 miRNA profile in lumbar spinal cord homogenate of SOD-miR155 Tg mice
GSE52947 Targeting miR-155 restores abnormal microglia and attenuates disease in SOD1 mice

Data table header descriptions
ID_REF
VALUE Normalized mRNA transcripts copies per 100ng of total RNA

Data table
ID_REF VALUE
mmu-let-7g 3815
mmu-let-7i 922
mmu-miR-1 52
mmu-miR-15b 237
mmu-miR-23b 200
mmu-miR-27b 28
mmu-miR-29b 4561
mmu-miR-30a 74
mmu-miR-30b 192
mmu-miR-99a 823
mmu-miR-99b 62
mmu-miR-101a 24
mmu-miR-124 3329
mmu-miR-125a-5p 1935
mmu-miR-125b-5p 7490
mmu-miR-126-5p 30
mmu-miR-126-3p 1606
mmu-miR-127 236
mmu-miR-128 92
mmu-miR-130a 48

Total number of rows: 599

Table truncated, full table size 9 Kbytes.




Supplementary file Size Download File type/resource
GSM1277670_20121129_sod_155_lumbar_mirna_01_01.RCC.gz 5.2 Kb (ftp)(http) RCC
Processed data included within Sample table

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