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Sample GSM1379509 Query DataSets for GSM1379509
Status Public on May 07, 2014
Title male larvae replicate 1 [miRNA]
Sample type RNA
 
Source name male third instar Drosophila larvae
Organism Drosophila melanogaster
Characteristics Sex: male
developmental stage: larvae
Treatment protocol Flies laid in staggered vials and larvae, pupae and adults samples collected at the same time from vials at the right stage of development. 10 individuals included in each biological replicate collected.
Growth protocol LHm outbred population kept at 25oC
Extracted molecule total RNA
Extraction protocol ambion miRvana total RNA extraction kit used according to manufacturer's protocol
Label biotin
Label protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Scan protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Description gene expression data from LHm outbred population
Data processing RMA standard
 
Submission date May 06, 2014
Last update date May 07, 2014
Contact name Fiona C Ingleby
Organization name University of Sussex
Department School of Biology
Street address John Maynard Smith Building
City Falmer
ZIP/Postal code BN1 9QG
Country United Kingdom
 
Platform ID GPL16384
Series (2)
GSE57321 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults [miRNA]
GSE57322 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults

Data table header descriptions
ID_REF
VALUE As provided by affy package, R 3.0.2, Bioconductor 2.2

Data table
ID_REF VALUE
dme-bantam-3p_st 5.944596152
dme-bantam-5p_st 1.690529628
dme-let-7-5p_st 8.294856117
dme-miR-10-3p_st 11.73141209
dme-miR-10-5p_st 7.973973337
dme-miR-100-3p_st 5.133320571
dme-miR-100-5p_st 5.716873322
dme-miR-1000-3p_st 5.676193533
dme-miR-1000-5p_st 5.868720143
dme-miR-1001-5p_st 1.22824084
dme-miR-1002-5p_st 1.27772988
dme-miR-1003-5p_st 4.559406312
dme-miR-1004-3p_st 1.86939963
dme-miR-1007-3p_st 0.867163587
dme-miR-1010-3p_st 3.606955102
dme-miR-1015-3p_st 5.460983987
dme-miR-1017-3p_st 4.765441072
dme-miR-11-5p_st 4.956724214
dme-miR-12-5p_st 10.74784938
dme-miR-124-3p_st 11.05166853

Total number of rows: 213

Table truncated, full table size 6 Kbytes.




Supplementary file Size Download File type/resource
GSM1379509_LM1.MI.CEL.gz 799.4 Kb (ftp)(http) CEL
Processed data included within Sample table

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