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Sample GSM1464088

Query DataSets for GSM1464088

Status

Public on Aug 15, 2014

Title

CN2

Sample type

RNA

Source name

colonic epithelial cells, Bacteroides-uniformis colonized

Organism

Mus musculus

Characteristics

strain: C57BL/6

Treatment protocol

Colons were dissected, epithelial cells were liberated by treatment with 5mM EDTA

Growth protocol

mice in gnotobiotic isolators

Extracted molecule

total RNA

Extraction protocol

Qiagen Rneasy Mini

Label

biotin

Label protocol

Illumina TotalPrep RNA

Hybridization protocol

Standard Illumina Protocol

Scan protocol

Illumina BeadStudio

Description

gnotobiotic animals

Data processing

Background subtraction and quantile normalization was performed with Illumina software
Raw or Background-subtracted, quantile normalized intensities from Illumina BeadStudio

Submission date

Aug 04, 2014

Last update date

Aug 15, 2014

Contact name

Cathryn Nagler

Organization name

University of Chicago

Street address

924 E 57th St

City

Chicago

State/province

ZIP/Postal code

60637

Country

USA

Platform ID

GPL6885

Series (1)

GSE60039

Commensal bacteria protect against food allergen sensitization

Data table header descriptions
ID_REF
VALUE	quantile normalised signal
Detection Pval

Data table
ID_REF	VALUE	Detection Pval
ILMN_2896528	877.3	0
ILMN_2721178	142.8	0
ILMN_3033922	52.3	0
ILMN_3092673	1780	0
ILMN_2816356	6.8	0.05013
ILMN_2808939	559.4	0
ILMN_2634564	136.6	0
ILMN_2737647	2.1	0.23559
ILMN_2734484	55.6	0
ILMN_2952292	42.9	0
ILMN_2699078	-3.8	0.86842
ILMN_1213681	70.2	0
ILMN_2735413	-1.9	0.6792
ILMN_2735415	1	0.32957
ILMN_2891688	209.7	0
ILMN_2637698	1088.5	0
ILMN_2674228	50.7	0
ILMN_2601546	-1.3	0.62657
ILMN_1230831	-0.8	0.54762
ILMN_2848071	6.7	0.05138

Total number of rows: 25697

Table truncated, full table size 593 Kbytes.

Supplementary data files not provided

Processed data included within Sample table