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Status
Public on Jan 20, 2007
Title
NRMRL control replicate04, uninfected batch052005 430_2 chip
Sample type
RNA
Source name
Neonatal small intestinal tissue, 24 hours
Organism
Mus musculus
Characteristics
Swiss Webster neonatal mouse, 4-6 days old
Extracted molecule
total RNA
Extraction protocol
TriZol procedure
Label
Strepavidin Phycoerythrin (SAPE)
Label protocol
Affymetrix SOP, EukGE-WS2
Hybridization protocol
GCOS software, EukGE-WS2
Scan protocol
GCOS software with 3000 Scanner
Description
None
Data processing
GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065, Tau 0.015; Gamma1L and 1H 0.0045; Gamma2L and 2H 0.06; and Pertubation 1.1.
Submission date
Jan 17, 2007
Last update date
Aug 28, 2018
Contact name
Samuel Hayes
E-mail(s)
hayes.sam@epa.gov
Phone
513-569-7514
Organization name
United States Environmental Protection Agency
Department
MS-387
Lab
NRMRL/WSWRD
Street address
26 W. Martin Luther King Dr.
City
Cincinnati
State/province
OH
ZIP/Postal code
45268
Country
USA
Platform ID
GPL1261
Series (1)
GSE6765
Aeromonas caviae infection, 24 hours
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
EPA05020_60832_M430-2_EPA0109N_Stat Pairs
Total probe sets
EPA05020_60832_M430-2_EPA0109N_Stat Pairs Used
Probe sets used
VALUE
Normalized intensity value
ABS_CALL
present versus absent call
DETECTION P-VALUE
Detection p-value
Data table
ID_REF
EPA05020_60832_M430-2_EPA0109N_Stat Pairs
EPA05020_60832_M430-2_EPA0109N_Stat Pairs Used
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
20
20
190.2
P
0.001409
AFFX-BioB-M_at
20
20
395.1
P
0.001248
AFFX-BioB-3_at
20
20
108.5
P
0.001796
AFFX-BioC-5_at
20
20
833.5
P
0.000081
AFFX-BioC-3_at
20
20
982.3
P
0.000044
AFFX-BioDn-5_at
20
20
1133.9
P
0.000044
AFFX-BioDn-3_at
20
20
4180.1
P
0.000225
AFFX-CreX-5_at
20
20
12298.9
P
0.000052
AFFX-CreX-3_at
20
20
13874.1
P
0.000044
AFFX-DapX-5_at
20
20
3.4
A
0.588620
AFFX-DapX-M_at
20
20
29.5
A
0.313723
AFFX-DapX-3_at
20
20
8.4
A
0.724854
AFFX-LysX-5_at
20
20
2.7
A
0.804734
AFFX-LysX-M_at
20
20
4.7
A
0.916408
AFFX-LysX-3_at
20
20
23.5
A
0.165861
AFFX-PheX-5_at
20
20
3.5
A
0.949771
AFFX-PheX-M_at
20
20
3.9
A
0.897835
AFFX-PheX-3_at
20
20
9.3
A
0.712257
AFFX-ThrX-5_at
20
20
5.4
A
0.910522
AFFX-ThrX-M_at
20
20
36.6
A
0.300606
Total number of rows: 45101 Table truncated, full table size 1500 Kbytes .Supplementary file
Size
Download
File type/resource
GSM155999.CEL.gz
4.0 Mb
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CEL