NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1675478 Query DataSets for GSM1675478
Status Public on May 06, 2015
Title becic-00235: D019: HG_U95C
Sample type RNA
 
Source name D019_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 49
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 168.204 A 0.559354
AFFX-MurIL10_at 193.68 A 0.48511
AFFX-MurIL4_at 73.726 A 0.300606
AFFX-MurFAS_at 178.94 A 0.131361
AFFX-BioB-5_at 1818.3 P 0.00110197
AFFX-BioB-M_at 3716.86 P 9.4506e-05
AFFX-BioB-3_at 1480.64 P 0.000146581
AFFX-BioC-5_at 5452.58 P 8.14279e-05
AFFX-BioC-3_at 4101.75 P 0.000126798
AFFX-BioDn-5_at 3805.26 P 4.42873e-05
AFFX-BioDn-3_at 21692.6 P 7.00668e-05
AFFX-CreX-5_at 46614.3 P 4.42873e-05
AFFX-CreX-3_at 62407.2 P 4.42873e-05
AFFX-BioB-5_st 345.82 A 0.165861
AFFX-BioB-M_st 262.878 A 0.440646
AFFX-BioB-3_st 86.7027 A 0.760937
AFFX-BioC-5_st 33.2411 A 0.860518
AFFX-BioC-3_st 127.632 A 0.354453
AFFX-BioDn-5_st 271.55 A 0.262827
AFFX-BioDn-3_st 1132.43 P 0.0044838

Total number of rows: 12646

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675478_D019_U95C.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675478_D019_U95Cmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675478_D019_U95Cmas5.CHP.txt.gz 128.8 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap