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Sample GSM169562 Query DataSets for GSM169562
Status Public on Feb 23, 2007
Title NCA library
Sample type MPSS
 
Source name 35 days old rice callus
Organism Oryza sativa
Characteristics Cultivar: Nipponbare
35 days - Callus
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRIzol reagent.
 
Description MPSS data were obtained from 35 days old rice callus.
Data processing For each of these samples, we determined the normalized abundance value for each signature in the library in "transcripts per million" or TPM. More details on this process are available in Meyers et al. (2004, Genome Research 14:1641). The numbers in the VALUE column represent the expression level of the corresponding signatures for the NCA library. More details about the samples, library replicates and individual signatures are available at http://mpss.udel.edu/rice.
 
Submission date Feb 20, 2007
Last update date Feb 22, 2007
Contact name Blake C. Meyers
E-mail(s) bmeyers@danforthcenter.org
Phone 314-587-1422
Organization name Donald Danforth Plant Science Center
Lab Meyers lab
Street address 975 N Warson Road
City St. Louis
State/province MO
ZIP/Postal code 63132
Country USA
 
Platform ID GPL3777
Series (1)
GSE7107 An expression atlas of rice mRNAs and small RNAs

Data table header descriptions
ID_REF
VALUE Normalized expression value

Data table
ID_REF VALUE
GATCAAAAAAAAAAAAA 128
GATCCAAAAAAAAAAAA 40
GATCGCCGAAAAAAAAA 25
GATCGTCCCAAAAAAAA 122
GATCCCCAAAAAAAAAA 11
GATCCGCAAAAAAAAAA 14
GATCCTCAAAAAAAAAA 26
GATCCTCCAAAAAAAAA 29
GATCGTCCAAAAAAAAA 41
GATCCATCAAAAAAAAA 4
GATCCACACAAAAAAAA 3
GATCCAGCCAAAAAAAA 10
GATCAGGGCAAAAAAAA 3
GATCTGCTCAAAAAAAA 27
GATCAATTCAAAAAAAA 28
GATCCCATCCTAAAAAA 17
GATCAGCAATGTAAAAA 7
GATCAAAGGAAAGGAAA 20
GATCAGCACTGTAAACA 6
GATCAACCATGGATGCA 3

Total number of rows: 27497

Table truncated, full table size 553 Kbytes.




Supplementary data files not provided

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