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Status
Public on May 26, 2006
Title
Rice mRNA MPSS signatures
Technology type
MPSS
Distribution
virtual
Organism
Oryza sativa
Description
mRNA MPSS signatures capture the 17 bases from near the 3' end of poly(A)+ transcripts
Web link
http://mpss.udel.edu Contributor(s)
Meyers BC Submission date
May 17, 2006
Last update date
Feb 17, 2007
Contact name
Blake C. Meyers
E-mail(s)
bmeyers@danforthcenter.org Phone
314-587-1422
Organization name
Donald Danforth Plant Science Center
Lab
Meyers lab
Street address
975 N Warson Road
City
St. Louis
State/province
MO
ZIP/Postal code
63132
Country
USA
Samples (19)
GSM109200 , GSM169562 , GSM169564 , GSM169566 , GSM169567 , GSM169568
GSM169569 ,
GSM169570 ,
GSM170900 ,
GSM170901 ,
GSM170902 ,
GSM170903 ,
GSM170904 ,
GSM170905 ,
GSM170906 ,
GSM170907 ,
GSM170909 ,
GSM170912 ,
GSM170914 Series (4)
GSE4920 Genomic and genetic characterization of rice Cen3 reveals evolutionary remnants of a complex centromere (mRNA data)
GSE4924 Genomic and genetic characterization of rice Cen3 reveals evolutionary remnants of a complex centromere
GSE7107 An expression atlas of rice mRNAs and small RNAs
GSE10523 Genome-wide analysis for rice small RNAs by MPSS
Data table header descriptions ID HITS number of genome hits for each signature
Data table ID HITS GATCAAAAAAAAAAAAA
20
GATCCAAAAAAAAAAAA
16
GATCGAAAAAAAAAAAA
0
GATCTCAAAAAAAAAAA
6
GATCAGAAAAAAAAAAA
4
GATCCGAAAAAAAAAAA
3
GATCACCAAAAAAAAAA
5
GATCGTCAAAAAAAAAA
0
GATCGCCGAAAAAAAAA
1
GATCGTCCCAAAAAAAA
1
GATCACCGGAAAAAAAA
0
GATCTGAAAAAAAAAAA
3
GATCCTAAAAAAAAAAA
0
GATCCACAAAAAAAAAA
0
GATCTACAAAAAAAAAA
0
GATCCCCAAAAAAAAAA
2
GATCGCCAAAAAAAAAA
2
GATCAGCAAAAAAAAAA
5
GATCCGCAAAAAAAAAA
1
GATCTGCAAAAAAAAAA
5
249990 4884 Kbytes .Supplementary data files not provided
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