|
| Status |
Public on Feb 23, 2007 |
| Title |
NSR library |
| Sample type |
MPSS |
| |
|
| Source name |
14 days - Young roots stressed in 250 mM NaCl for 24h
|
| Organism |
Oryza sativa |
| Characteristics |
Cultivar: Nipponbare
14 days - Young roots stressed in 250 mM NaCl for 24h
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated using TRIzol reagent.
|
| |
|
| Description |
MPSS data were obtained from Nipponbare rice 14 days - Young roots stressed in 250 mM NaCl for 24h.
|
| Data processing |
For each of these samples, we determined the normalized abundance value for each signature in the library in "transcripts per million" or TPM. More details on this process are available in Meyers et al. (2004, Genome Research 14:1641). The numbers in the VALUE column represent the expression level of the corresponding signatures for the NSR library. More details about the samples, library replicates and individual signatures are available at http://mpss.udel.edu/rice.
|
| |
|
| Submission date |
Feb 22, 2007 |
| Last update date |
Feb 22, 2007 |
| Contact name |
Blake C. Meyers |
| E-mail(s) |
bmeyers@danforthcenter.org
|
| Phone |
314-587-1422
|
| Organization name |
Donald Danforth Plant Science Center
|
| Lab |
Meyers lab
|
| Street address |
975 N Warson Road
|
| City |
St. Louis |
| State/province |
MO |
| ZIP/Postal code |
63132 |
| Country |
USA |
| |
|
| Platform ID |
GPL3777 |
| Series (1) |
| GSE7107 |
An expression atlas of rice mRNAs and small RNAs |
|
