|
| Status |
Public on Jun 18, 2015 |
| Title |
BCFD118 |
| Sample type |
genomic |
| |
|
| Source name |
genomic DNA from breast sample BCFD118
|
| Organism |
Homo sapiens |
| Characteristics |
molecule subtype: bi-sulphite converted genomic DNA from BCFD118
status(0=normal 1=normal-adjacent 2=breast cancer 3=normal-brca1 4=cancer-brca1): 2
ChIP: 9257626085
er: 1
pr: 1
her2: 0
ki67: 0
sentrix id: 9257626085_R06C02
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from samples using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol for Infinium 450k Chip
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
|
| Description |
Normal breast, normal-adjacent and breast cancer tissue samples
***WARNING: incomplete metadata supplied for this study***
|
| Data processing |
idat files processed using minfi V1.8.9 and BMIQ v1.4
|
| |
|
| Submission date |
Jun 16, 2015 |
| Last update date |
Nov 13, 2017 |
| Contact name |
Andrew E Teschendorff |
| E-mail(s) |
a.teschendorff@ucl.ac.uk
|
| Phone |
+44 02076790727
|
| Organization name |
University College London
|
| Department |
UCL Cancer Institute/Institute for Women's Health
|
| Street address |
72 Huntley Street
|
| City |
London |
| ZIP/Postal code |
WC1E 6BT |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL16304 |
| Series (1) |
| GSE69914 |
Genome wide DNA methylation profiling of normal breast, normal adjacent and breast cancer tissue |
|
