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Sample GSM1720681 Query DataSets for GSM1720681
Status Public on Jul 01, 2016
Title 4 Week-old WT testis_rep2
Sample type RNA
 
Source name 4 week-old WT
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: testis
age: 4 week old
genotype: WT
Treatment protocol Nothing was treated.
Growth protocol Pups were stayed with their biological mother.
Extracted molecule total RNA
Extraction protocol Qiagen RNA easy mini kit.
Label Cy3
Label protocol Starting with 500ng of total RNA, Cy3 labeled cRNA was produced according to manufacturer’s protocol.
 
Hybridization protocol For each sample, 1.65ug of Cy3 labeled cRNAs were fragmented and hybridized for 17 hours in a rotating hybridization oven.
Scan protocol Slides were washed and then scanned with an Agilent Scanner.
Description RNA samples from 4 week-old WT
Data processing Data was obtained using the Agilent Feature Extraction software (v9.5), using the 1-color defaults for all parameters.
 
Submission date Jun 23, 2015
Last update date Jul 01, 2016
Contact name NIEHS Microarray Core
E-mail(s) microarray@niehs.nih.gov, liuliw@niehs.nih.gov
Organization name NIEHS
Department DIR
Lab Microarray Core
Street address 111 T.W. Alexander Drive
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL4134
Series (2)
GSE70194 Glis3 plays a crucial role in spermatogenesis [848_827]
GSE70196 Glis3 plays a crucial role in spermatogenesis

Data table header descriptions
ID_REF
VALUE processed Cy3 signal intensity (Agilent gProcessedSignal)

Data table
ID_REF VALUE
1 4.186741e+004
2 5.647087e+000
3 5.641577e+000
4 5.634423e+000
5 5.627286e+000
6 5.618556e+000
7 5.608138e+000
8 5.597242e+000
9 5.586178e+000
10 5.573212e+000
11 5.560037e+000
12 5.546169e+000
13 1.975666e+002
14 2.545972e+004
15 1.511161e+002
16 2.132016e+002
18 5.447578e+000
19 5.429490e+000
20 5.409468e+000
21 5.391449e+000

Total number of rows: 45018

Table truncated, full table size 868 Kbytes.




Supplementary file Size Download File type/resource
GSM1720681_US23502387_251486839289_S01_GE1-v5_95_Feb07_1_1.txt.gz 9.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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