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Status |
Public on Jan 13, 2017 |
Title |
4025 |
Sample type |
RNA |
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|
Source name |
subcutaneous adipose tissue
|
Organism |
Homo sapiens |
Characteristics |
tissue: subcutaneous adipose tissue gender: male age: 57 bmi: 28.5633127130413 whr: 1.04568527918782 waist_circumference: 103 hip_circumference: 98.5 ffmass: 75.6 totfa: 11.58424 p_adipon: 4.1 matsuda: 2.74632747060737 p_crp: 5.018 p_il1ra: 89.24 gfr: 0.089275264395361 p_ffa0: 0.44 s_tottg: 1.32 s_totalc: 5.31 s_ldlc: 3.69 s_hdlc: 1.05 homair: 4.64444444444444 p_gl0: 5.5 p_ins0: 19 p_proi0: 14.4 b_ghba1c: 5.8 systbp: 133.333333333333 diastbp: 98.6666666666667
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiazol with homogenization followed by Rneasy spin columns with option Dnase per manufacturers protocol
|
Label |
biotin
|
Label protocol |
All target labeling reagents were purchased from Affymetrix (Santa Clara, CA). Double-stranded cDNAs were synthesized from 1ug total RNA through reverse transcription with an oligo-dT primer containing the T7 RNA polymerase promoter and double strand conversion using the cDNA Synthesis System. Biotin-labeled cRNA was generated from the cDNA and used to probe Affymetrix Mouse Genome HT_MG-430A arrays.
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|
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Hybridization protocol |
Array hybridization, washing and scanning were performed according to the manufacturer’s recommendations.
|
Scan protocol |
Scanned images were subjected to visual inspection and a chip quality report was generated by the Affymetrix's GeneChip Operating System (GCOS) and Expression console (Affymetrix).
|
Data processing |
The image data was processed using the Affymetrix GCOS algorithm utilizing quantile normalization or the Robust Multiarray method (RMA) to determine the specific hybridizing signal for each gene.
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Submission date |
Jun 28, 2015 |
Last update date |
Jan 13, 2017 |
Contact name |
Calvin Pan |
Organization name |
UCLA
|
Street address |
675 Charles Young Dr South
|
City |
Los Angeles |
ZIP/Postal code |
90095 |
Country |
USA |
|
|
Platform ID |
GPL13667 |
Series (1) |
GSE70353 |
Subcutaneous adipose tissue gene expression from men that are part of the METSIM study |
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