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GEO accession:
Sample GSM1810226
Query DataSets for GSM1810226
Status
Public on Jul 20, 2015
Title
12-9-2013, Individual #3 SAMPLE 264
Sample type
RNA
Source name
Reduction mammoplasty
Organism
Homo sapiens
Characteristics
disease state: Luminal progenitor
Treatment protocol
n/a
Growth protocol
n/a
Extracted molecule
total RNA
Extraction protocol
Enzymatic tissue digest
Label
SYBR Green
Label protocol
Single-cell gene expression using SsoFast EvaGreen SuperMix with low Rox on the BioMark system, advanced protocol 41
Hybridization protocol
n/a
Scan protocol
n/a
Description
Luminal progenitor
Data processing
Data analyzed using Fluidigm real-time PCR analysis software and custom algorithms in R statistical software
Submission date
Jul 06, 2015
Last update date
Jul 20, 2015
Contact name
Devon Lawson
E-mail(s)
Devon.Lawson@ucsf.edu
Organization name
UCSF
Department
Anatomy
Lab
Zena Werb
Street address
513 Parnassus Ave Hsw 1301
City
San Francisco
State/province
California
ZIP/Postal code
94143
Country
USA
Platform ID
GPL20665
Series (2)
GSE70554
Single-cell analysis reveals a stem cell program in human metastatic breast cancer cells (Human patients - mammary cells)
GSE70555
Single-cell analysis reveals a stem cell program in human metastatic breast cancer cells
Data table header descriptions
ID_REF
VALUE
normalized signal
Data table
ID_REF
VALUE
ACTA2
-1.284466442
AKT1
AR
-5.652273719
BCL2
0.337023984
BCL2L1
3.360496946
BMI1
-1.017192628
BRCA1
CASP3
CAV1
1.508697356
CAV2
-0.107453411
CCNB1
-4.15937513
CCND1
CCNE1
-2.090127459
MME
2.666880237
CD24
5.914951622
CD44
2.603325007
THY1
0.032068508
CDH1
0.040124006
CDH3
0.752712052
CDK1
-0.712221828
Total number of rows:
111
Table truncated, full table size
1 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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