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Sample GSM2066034 Query DataSets for GSM2066034
Status Public on Jul 21, 2016
Title Before infliximab administration, Non-remission-56
Sample type RNA
 
Source name Whole blood, Rheumatoid arthritis, Before infliximab administration, Non-remission
Organism Homo sapiens
Characteristics tissue: Whole blood
disease: Rheumatoid arthritis
sampling point: Before infliximab administration
clinical outcome: Non-remission
gender: Male
age: 61
Treatment protocol Before administration with biologic agent, blood samples were collected in PAXgene Blood RNA tubes.
Extracted molecule total RNA
Extraction protocol RNA was prepared using the PAXgene Blood RNA Kit (QIAGEN) according to the manufacture's instructions.
Label Cy3
Label protocol Agilent one-color Quick Amp Labeling Kit labeling protocol
 
Hybridization protocol Agilent one-color gene expression hyb/wash protocol
Scan protocol Slides were scanned immediately after washing on an Agilent DNA Microarray Scanner using one color scan setting for 1x44k array slides.
Data processing The scanned images were analyzed with Feature Extraction Software (Agilent) using default parameters to obtain background subtracted and spatially detrended Processed Signal intensities. We applied rank-based quantile normalization to the raw signal data.
 
Submission date Feb 18, 2016
Last update date Jul 21, 2016
Contact name Seiji Nakamura
E-mail(s) nakamura@dna-chip.co.jp
Phone +81-3-5777-1700
Organization name DNA Chip Research Inc.
Street address 1-15-1, Kaigan, Suzuebaydium 5F
City Minato-ku
State/province Tokyo
ZIP/Postal code 105-0022
Country Japan
 
Platform ID GPL6480
Series (1)
GSE78068 Identification of baseline gene expression signatures predicting therapeutic responses to three biologic agents in rheumatoid arthritis: a retrospective observational study

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
(-)3xSLv1 1.516667624
(+)E1A_r60_1 17.74470132
(+)E1A_r60_3 2.06982504
(+)E1A_r60_a104 3.834489109
(+)E1A_r60_a107 5.454387709
(+)E1A_r60_a135 8.655280971
(+)E1A_r60_a20 9.9561199
(+)E1A_r60_a22 12.07947321
(+)E1A_r60_a97 13.84823638
(+)E1A_r60_n11 16.16634854
(+)E1A_r60_n9 16.22330165
(+)eQC-39 1.557413208
(+)eQC-40 1.770341582
(+)eQC-41 1.868637444
(+)eQC-42 1.464022048
A_23_P100001 4.54294765
A_23_P100011 3.770709525
A_23_P100022 4.630846822
A_23_P100056 1.46654884
A_23_P100074 8.210453429

Total number of rows: 41093

Table truncated, full table size 985 Kbytes.




Supplementary file Size Download File type/resource
GSM2066034_Sample-56.txt.gz 7.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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