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Status |
Public on Apr 25, 2016 |
Title |
mouse fibrotic liver tissue, biological rep2 |
Sample type |
RNA |
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Source name |
CCl4-induced liver fibrosis at 6 weeks, biological rep2
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Organism |
Mus musculus |
Characteristics |
gender: Male strain: Balb/c tissue: liver
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Treatment protocol |
After acclimatization for one week, the hepatic fibrosis mice model was produced by administration of carbon tetrachloride (CCl4, Sigma-Aldrich, St. Louis, MO, USA) for 6 weeks, while the control Balb/c mice treated with oil for 6 weeks.
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Growth protocol |
All Balb/c mice aged at 8 weeks obtained from institute of laboratory animal sciences, CAMS & PUMC (Beijing , China), weighting about 20g. Mice were maintained in a 12-h light/dark cycle at 22- 25°C with free access to food and water. All protocols were approved by the Ethical Committee of Tianjin Medical University.
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Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
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Label |
biotin
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Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA ( The Ambion® WT Expression Kit For Affymetrix® GeneChip® Whole Transcript (WT) Expression Arrays, 2009, Affymetrix).
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Hybridization protocol |
Following fragmentation, double-stranded cDNA were hybridized for 16 hr at 45℃ on Affymetrix Mouse Gene ST 1.0 array (Affymetrix, SantaClara, CA, USA). GeneChips were washed and stained in the GeneChip2 Fluidics Station 450.
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Scan protocol |
GeneChips were scanned using the GeneChip2 Scanner 3000 7G.
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Description |
Gene expression data from CCl4-induced Balb/c mice liver fibrosis at 6 weeks
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Data processing |
Tiff images generated by the GeneChip2 Scanner 3000 7G were processed by the Genepix 6 microarray analysis software (Molecular Devices). Gene array analysis was performed according to the manufacturer’s instructions (GeneChip 430 2.0 and 230 2.0; Affymetrix, Santa Clara, CA).
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Submission date |
Apr 25, 2016 |
Last update date |
Apr 25, 2016 |
Contact name |
Kun Zhang |
E-mail(s) |
zhangkun@tmu.edu.cn
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Phone |
022-83336819
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Organization name |
Tianjin medical university
|
Department |
Department of Histology and Embryology
|
Street address |
Qixiangtai Road NO.22
|
City |
Tianjin |
ZIP/Postal code |
300070 |
Country |
China |
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Platform ID |
GPL6096 |
Series (1) |
GSE80601 |
Expression data from murine fibrotic liver tissues and normal liver tissues |
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