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GEO accession:
Sample GSM2626
Query DataSets for GSM2626
Status
Public on Nov 13, 2002
Title
D3_TP-72_I
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Donor 3 Time point 72 hours
post Infection with HIV-1, RF
Submission date
Nov 13, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs InAvg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs InAvg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
15
2
18
0.75
11677
P
AFFX-BioB-M_at
15
1
19
0.75
11190
P
AFFX-BioB-3_at
16
2
17
0.8
16712
P
AFFX-BioC-5_at
17
0
19
0.85
26406
P
AFFX-BioC-3_at
18
0
20
0.9
36377
P
AFFX-BioDn-5_at
17
0
19
0.85
13780
P
AFFX-BioDn-3_at
18
1
18
0.9
62874
P
AFFX-CreX-5_at
19
0
20
0.95
202679
P
AFFX-CreX-3_at
18
0
20
0.9
204484
P
AFFX-BioB-5_st
7
4
18
0.35
666
A
AFFX-BioB-M_st
5
6
18
0.25
-2207
A
AFFX-BioB-3_st
4
8
19
0.2
-1986
A
AFFX-BioC-5_st
2
8
18
0.1
-3869
A
AFFX-BioC-3_st
5
3
18
0.25
879
A
AFFX-BioDn-5_st
9
5
19
0.45
2844
A
AFFX-BioDn-3_st
6
5
18
0.3
846
A
AFFX-CreX-5_st
7
6
19
0.35
627
A
AFFX-CreX-3_st
4
6
18
0.2
-1014
A
hum_alu_at
50
0
69
0.72
195548
P
AFFX-DapX-5_at
6
6
18
0.3
1915
A
Total number of rows:
7129
Table truncated, full table size
207 Kbytes
.
Supplementary data files not provided
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