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Sample GSM2889237 Query DataSets for GSM2889237
Status Public on Mar 01, 2018
Title Mesoblastisc nephroma Sample 6
Sample type genomic
 
Source name tumor biopsy
Organism Homo sapiens
Characteristics condition: Mesoblastisc nephroma
Treatment protocol none
Growth protocol none
Extracted molecule genomic DNA
Extraction protocol Qiagen manufactures procedure automatized on QiaCube; specifically Rneasy MIniPrep. DNA quality and quantity was controled by BioAnalyzer and Nanodrop.
Label Biotin
Label protocol affymetrix manufactures procedure
 
Hybridization protocol affymetrix manufactures procedure
Scan protocol affymetrix manufactures procedure
Description Hybridized to CytoScanHD
Data processing BioDiscovery software NEXUS 8.0
data represent the CNAs calls based on CytoScanHD arrays from Affymetrix
 
Submission date Dec 14, 2017
Last update date Mar 01, 2018
Contact name Wiktor Majewski
Organization name Copenhagen University Hospital
Department Center for Genomic Medicine
Street address Blegdamsvej 9
City Copenhagen
ZIP/Postal code 2100
Country Denmark
 
Platform ID GPL16131
Series (2)
GSE108085 Comprehensive molecular profiling of children with recurrent cancer I
GSE108089 Comprehensive molecular profiling of children with recurrent cancer

Data table header descriptions
ID_REF
VALUE LOG2 RATIO
WEIGHTED LOG2 RATIO
SMOOTH SIGNAL

Data table
ID_REF VALUE WEIGHTED LOG2 RATIO SMOOTH SIGNAL
C-7SARK 0.312149 0.188231 2.020061
C-4WYLN -0.064070 0.161567 2.018915
C-3BFNY -0.008926 0.055161 2.018114
C-7ONNE 0.194277 0.028473 2.019136
C-6HYCN 0.347826 0.129369 2.018898
C-7SCGC 0.166242 0.102608 2.018314
C-7RZQQ -0.080199 -0.000930 2.017633
C-7RZWZ -0.230659 -0.027837 2.016664
C-7SEBI -0.363551 0.085033 2.017063
C-7RZIL 0.266413 0.057877 2.017948
C-4NQTX 0.259768 -0.040401 2.018085
C-7SDKW -0.128071 -0.067943 2.018236
S-3WRNV nan nan nan
C-7RXVK -0.011978 -0.065301 2.017419
C-4LHKS 0.001133 -0.093356 2.017107
C-7RWHE -0.444159 -0.185322 2.016351
C-7SBEJ -0.102975 -0.213995 2.015551
C-7RYJO 0.345064 0.305284 2.014876
C-7SEGS 0.137200 0.275950 2.014490
C-4LLXK 0.219032 0.190756 2.013627

Total number of rows: 2749693

Table truncated, full table size 96081 Kbytes.




Supplementary file Size Download File type/resource
GSM2889237_Sample_6_SNP.CEL.gz 29.0 Mb (ftp)(http) CEL
GSM2889237_Sample_6_SNP.cychp.gz 80.0 Mb (ftp)(http) CYCHP
Processed data included within Sample table
Processed data provided as supplementary file

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