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Sample GSM348495 Query DataSets for GSM348495
Status Public on May 01, 2009
Title liver sample time 20.0 hours mx-cre MINUS replicate A batch PHX3
Sample type RNA
 
Source name liver following partial hepatectomy
Organism Mus musculus
Characteristics Genetic: RPS6 homozygous floxed
Genetic: mx-cre transgene MINUS
Strain : C57BL/6
Age: 3 months
Gender : male
Batch: PHX3
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from frozen liver samples using Trizol (Invitrogen), folowing the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description liver sample collected at 20.0 hours following partial hepatectomy in a mx-cre MINUS transgenic mice homozygous for the RPS6 floxed mutation
Data processing RMA Normalized values
 
Submission date Dec 08, 2008
Last update date Dec 08, 2008
Contact name Alessandro Di Cara
E-mail(s) ale@di-cara.com
Organization name Friedrich Miescher Institute
Street address Maulbeerstrasse 66
City Basel
ZIP/Postal code 4058
Country Switzerland
 
Platform ID GPL81
Series (1)
GSE13864 Effect of conditional deletion of S6 ribosomal protein following partial hepatectomy

Data table header descriptions
ID_REF
VALUE RMA Normalized values

Data table
ID_REF VALUE
100001_at 4.103468807
100002_at 12.58256754
100003_at 3.833293789
100004_at 7.069843151
100005_at 7.740475943
100006_at 3.178712814
100007_at 7.346375383
100009_r_at 2.989766255
100010_at 7.155861193
100011_at 6.442962516
100012_at 7.89210522
100013_at 7.957107376
100014_at 4.336234545
100015_at 5.615655338
100016_at 4.470224885
100017_at 4.783212804
100018_at 6.901594885
100019_at 4.577779838
100020_at 7.256092984
100021_at 3.803775409

Total number of rows: 12488

Table truncated, full table size 267 Kbytes.




Supplementary file Size Download File type/resource
GSM348495.CEL.gz 2.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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