|
| Status |
Public on May 07, 2019 |
| Title |
Per12 year 1 |
| Sample type |
genomic |
| |
|
| Source name |
buffy coat
|
| Organism |
Homo sapiens |
| Characteristics |
year (visit year when sample was collected): 1
baseline age: 71
self reported race: African American
self sex: Female
|
| Treatment protocol |
na
|
| Growth protocol |
na
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA provided by Health ABC biorepository; standard DNA extraction protocol
|
| Label |
Cy3, Cy5
|
| Label protocol |
Illumina
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
|
| Scan protocol |
Illumina scaner
|
| Description |
Per12
CpG methylation
Sample23
|
| Data processing |
Raw intensity data files (idat files) for both mouse and human samples were processed using the R package Minfi.
|
| |
|
| Submission date |
May 06, 2019 |
| Last update date |
May 07, 2019 |
| Contact name |
Khyobeni Mozhui |
| E-mail(s) |
kmozhui@uthsc.edu
|
| Organization name |
University of Tennessee Health Science Center
|
| Department |
Preventive Medicine
|
| Street address |
66 N. Pauline Street, #631
|
| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38163 |
| Country |
USA |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE130748 |
Longitudinal Study of Leukocyte DNA Methylation and Biomarkers for Cancer Risk in Older Adults |
|
