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| Status |
Public on Sep 25, 2021 |
| Title |
X9c: Untreated |
| Sample type |
SRA |
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| Source name |
K562
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| Organism |
Homo sapiens |
| Characteristics |
cell line: K562
replicate: replicate 3
sledai: A3
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| Extracted molecule |
total RNA |
| Extraction protocol |
NucleoSpin RNA XS
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Created Bowtie index using the GrCh38 assembly of the human genome
Estimated abundances with RSEM using default parameters
Differential expression analysis performed using DESeq2
Genome_build: GrCh38
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| Submission date |
May 22, 2019 |
| Last update date |
Sep 25, 2021 |
| Contact name |
Carol Webb |
| E-mail(s) |
carol-webb@ouhsc.edu
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| Organization name |
OUHSC
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| Department |
Department of Medicine
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| Street address |
Stephenson Parkway
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| City |
Norman |
| State/province |
Oklahoma |
| ZIP/Postal code |
73069 |
| Country |
USA |
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| Platform ID |
GPL18573 |
| Series (1) |
| GSE131649 |
ARID3a is Required for Erythrocyte Lineage Differentiation of Hemin Stimulated Human K562 Cells |
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| Relations |
| BioSample |
SAMN11831450 |
| SRA |
SRX5883930 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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