|
| Status |
Public on Jan 31, 2020 |
| Title |
ATRT_EURHAB_33 |
| Sample type |
genomic |
| |
|
| Source name |
Primary ATRT tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
molecular subgroup: TYR
gender: male
age (yr): 0
tumor location: infratentorial
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extraction of high molecular weight DNA from frozen tumor samples was carried out by use of a salting-out method or by ultracentrifugation over cesium chloride.
|
| Label |
biotin/DNP
|
| Label protocol |
standard Illumina protocol
|
| |
|
| Hybridization protocol |
standard Illumina protocol
|
| Scan protocol |
standard Illumina protocol
|
| Description |
DNA methylation data from an ATRT tumor sample
|
| Data processing |
Normalization was performed by applying the function preprocessIllumina available in Bioconductor package minfi
|
| |
|
| Submission date |
Nov 26, 2019 |
| Last update date |
Jan 31, 2020 |
| Contact name |
Martin Sill |
| E-mail(s) |
m.sill@dkfz.de
|
| Organization name |
DKFZ
|
| Department |
Division of Pediatric Neurooncology
|
| Street address |
Im Neuenheimer Feld 280
|
| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE141039 |
DNA methylation data from 153 ATRT tumor samples |
|
