|
| Status |
Public on Nov 05, 2020 |
| Title |
LIVER-ATAC-PM3 |
| Sample type |
SRA |
| |
|
| Source name |
Liver
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Liver
treatment: PM exposure
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Wash cells with 50ul cold 1X PBS in epi tube, centrifuge to pellet, discard supernatant
Tn5 treatment, Nextera DNA Library prep kit using standard protocols
|
| |
|
| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
HiSeq X Ten |
| |
|
| Data processing |
cutadapt
BWA alignment
Python script, peak-level extraction
Genome_build: mm10
|
| |
|
| Submission date |
Feb 24, 2020 |
| Last update date |
Nov 05, 2020 |
| Contact name |
Bongsoo Park |
| E-mail(s) |
bongsoo.park@nih.gov
|
| Phone |
1-410-558-8510
|
| Organization name |
National Institute on Aging
|
| Department |
Translational Gerontology Branch
|
| Lab |
Epigenetics and Stem Cell Aging
|
| Street address |
251 Bayview Blvd
|
| City |
Baltimore |
| State/province |
Maryland |
| ZIP/Postal code |
21224 |
| Country |
USA |
| |
|
| Platform ID |
GPL21273 |
| Series (1) |
| GSE145840 |
Metabolic Effects of Air Pollution Exposure and Reversibility |
|
| Relations |
| BioSample |
SAMN14175120 |
| SRA |
SRX7795021 |
