|
| Status |
Public on Mar 06, 2020 |
| Title |
EOC5: Female high grade serous ovarian cancer, primary tumor |
| Sample type |
genomic |
| |
|
| Source name |
Female high grade serous ovarian cancer, primary tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
grade: high grade serous ovarian cancer, primary tumor
grade: 3
histotype: serous
patient age: 77
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was isolated using the Puregene Tissue Kit (Qiagen)
|
| Label |
biotin
|
| Label protocol |
Probe labeling was performed according to manufactures recomendation for Affymetrix Cytoscan HD microarrays
|
| |
|
| Hybridization protocol |
Hybridizations were performed according to manufactures recomendation for Affymetrix Cytoscan HD microarrays
|
| Scan protocol |
Microarray scans were performed according to manufactures recomendation for Affymetrix Cytoscan HD microarrays
|
| Data processing |
The total number and size (segments) of CNA per sample were determined using the Affymetrix Chromosome Analysis Suite (ChAS) Software. A CNA index was calculated for each sample based on the percent of the genome that resulted in either a copy number loss or gain.
*Segments.txt: Total number and size of copy number gain and loss segments across genome
|
| |
|
| Submission date |
Mar 06, 2020 |
| Last update date |
Mar 08, 2020 |
| Contact name |
Adam R Karpf |
| E-mail(s) |
adam.karpf@unmc.edu
|
| Phone |
402-559-6115
|
| Organization name |
UNMC
|
| Street address |
S 42nd &, Emile St
|
| City |
Omaha |
| State/province |
NE |
| ZIP/Postal code |
68198 |
| Country |
USA |
| |
|
| Platform ID |
GPL16131 |
| Series (2) |
| GSE146554 |
Global DNA hypomethylation in ovarian cancer (CNV_data) |
| GSE146556 |
Global DNA hypomethylation in ovarian cancer |
|
