|
| Status |
Public on Mar 09, 2021 |
| Title |
Beat AML project [15-00965] |
| Sample type |
genomic |
| |
|
| Source name |
Bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: Diagnosis
tissue: Bone marrow
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was isolated using column-based preparation (Qiagen)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium methylationEPIC using standard Illumina protocol
|
| Scan protocol |
BeadArray fluorescence was measured using the Illumina iScan
|
| Description |
Diagnosis bone barrow sample
Bone marrow-derived genomic DNA sample obtained from the Beat AML project [15-00965]
|
| Data processing |
Data were normalized by the beta mixture quantile (BMIQ) method using the RnBeads analysis software package.
Beta_values.csv.gz: BMIQ normalized Average Beta
Signal_Intensities.csv.gz: Unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Oct 23, 2020 |
| Last update date |
Mar 09, 2021 |
| Contact name |
Christopher OAKES |
| E-mail(s) |
christopher.oakes@osumc.edu
|
| Phone |
6146859284
|
| Organization name |
The Ohio State University
|
| Street address |
400 W. 12th Avenue, Wiseman Hall, Suite 455
|
| City |
Columbus |
| State/province |
OH |
| ZIP/Postal code |
43210 |
| Country |
USA |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE159907 |
DNA methylation analysis of acute myeloid leukemia (AML) |
|
