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Sample GSM4955187

Query DataSets for GSM4955187

Status

Public on Dec 04, 2020

Title

1237

Sample type

genomic

Source name

born high altitude, current low altitude

Organism

Homo sapiens

Characteristics

tissue: whole blood
group: Group2

Extracted molecule

genomic DNA

Extraction protocol

Qiagen Dneasy blood kit

Label

Cy3,Cy5

Label protocol

not provided

Hybridization protocol

University of Michigan Epigenomics Core

Scan protocol

University of Michigan Epigenomics Core

Data processing

Data was processed using the pipeline in Childebayeva A. et al. 2020. Genome-wide epigenetic signatures of adaptive developmental plasticity in the andes. Genome Biol Evol.
Beta values were normalized using preprocessQuantile (minfi) and ChampBMIQ (ChAMP) functions

Submission date

Dec 03, 2020

Last update date

Dec 04, 2020

Contact name

Ainash Childebayeva

E-mail(s)

childebayeva@shh.mpg.de

Organization name

Max Planck Institute for the Science of Human History

Department

Archaeogenetics

Street address

Kahlaische Strasse 10

City

Jena

State/province

thuringia

ZIP/Postal code

07745

Country

Germany

Platform ID

GPL21145

Series (1)

GSE162606

Hypoxia exposure and methylation

Data table header descriptions
ID_REF
VALUE	normalized Beta

Data table
ID_REF	VALUE
cg14817997	0.804767828
cg26928153	0.802368168
cg16269199	0.712847983
cg13869341	0.7819675
cg02404219	0.860406283
cg04098293	0.632032319
cg16382250	0.765645646
cg22463138	0.780299314
cg01803908	0.790144238
cg24669183	0.743494915
cg25018832	0.115976128
cg26679879	0.351033436
cg22519184	0.385359902
cg11894324	0.160289278
cg02288058	0.229999896
cg12376350	0.115703199
cg11330075	0.11986662
cg01577251	0.901044937
cg13128577	0.876745337
cg15560884	0.672743077

Total number of rows: 759154

Table truncated, full table size 16978 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM4955187_201364900064_R02C01_Grn.idat.gz	7.0 Mb	(ftp)(http)	IDAT
GSM4955187_201364900064_R02C01_Red.idat.gz	7.1 Mb	(ftp)(http)	IDAT
Processed data included within Sample table