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Sample GSM4955221

Query DataSets for GSM4955221

Status

Public on Dec 04, 2020

Title

8067

Sample type

genomic

Source name

born high altitude, current high altitude

Organism

Homo sapiens

Characteristics

tissue: whole blood
group: Group3

Extracted molecule

genomic DNA

Extraction protocol

Qiagen Dneasy blood kit

Label

Cy3,Cy5

Label protocol

not provided

Hybridization protocol

University of Michigan Epigenomics Core

Scan protocol

University of Michigan Epigenomics Core

Data processing

Data was processed using the pipeline in Childebayeva A. et al. 2020. Genome-wide epigenetic signatures of adaptive developmental plasticity in the andes. Genome Biol Evol.
Beta values were normalized using preprocessQuantile (minfi) and ChampBMIQ (ChAMP) functions

Submission date

Dec 03, 2020

Last update date

Dec 04, 2020

Contact name

Ainash Childebayeva

E-mail(s)

childebayeva@shh.mpg.de

Organization name

Max Planck Institute for the Science of Human History

Department

Archaeogenetics

Street address

Kahlaische Strasse 10

City

Jena

State/province

thuringia

ZIP/Postal code

07745

Country

Germany

Platform ID

GPL21145

Series (1)

GSE162606

Hypoxia exposure and methylation

Data table header descriptions
ID_REF
VALUE	normalized Beta

Data table
ID_REF	VALUE
cg14817997	0.739004723
cg26928153	0.855754545
cg16269199	0.705723937
cg13869341	0.763926244
cg02404219	0.834217809
cg04098293	0.637053533
cg16382250	0.793759472
cg22463138	0.726227634
cg01803908	0.759649204
cg24669183	0.722896129
cg25018832	0.122931516
cg26679879	0.292717095
cg22519184	0.345135667
cg11894324	0.1609429
cg02288058	0.255093381
cg12376350	0.134530687
cg11330075	0.114310847
cg01577251	0.904183794
cg13128577	0.849887132
cg15560884	0.639944649

Total number of rows: 759154

Table truncated, full table size 16979 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM4955221_201236480029_R06C01_Grn.idat.gz	7.1 Mb	(ftp)(http)	IDAT
GSM4955221_201236480029_R06C01_Red.idat.gz	7.1 Mb	(ftp)(http)	IDAT
Processed data included within Sample table