|
Status |
Public on Aug 11, 2021 |
Title |
genomic DNA from ovarian cancer tissues [G687] |
Sample type |
genomic |
|
|
Source name |
Tumor Tissues
|
Organism |
Homo sapiens |
Characteristics |
Sex: female Stage: 4 grade: 3 age: 52 tumour subtypes: O1C tumour subtypes2: clear cell primary chemotherapy treatment: carboplatin/pacelitaxel recurrence: 3 doot: 24-Nov-15 dodx: 24-Nov-15 survivial status: 4
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip kit using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina iScan System
|
Description |
Ovarian tumor tissue R04C01
|
Data processing |
Genome Studio Version 2011.1 and Methylation Fenome Studio Module v1.9
|
|
|
Submission date |
Mar 15, 2021 |
Last update date |
Aug 11, 2021 |
Contact name |
David Wai Chan |
E-mail(s) |
dwchan@hku.hk
|
Phone |
852-39179367
|
Organization name |
The Uniersity of Hong Kong
|
Department |
Obs. & Gyn.
|
Lab |
Oncology
|
Street address |
L747 Laboratory Block, LKS Faculty of Medicine, 21 Sassoon Road
|
City |
Pokfulam |
State/province |
Hong Kong |
ZIP/Postal code |
852 |
Country |
Hong Kong |
|
|
Platform ID |
GPL21145 |
Series (2) |
GSE168926 |
Genome-wide DNA methylome analysis identifies putative biomarkers associated with the survival of human ovarian cancers [80 cases] |
GSE168930 |
Genome-wide DNA methylome analysis identifies putative biomarkers associated with the survival of human ovarian cancers |
|