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Sample GSM559743 Query DataSets for GSM559743
Status Public on Jun 25, 2010
Title CardiacMuscle_Vehicle_168hrs_rep5
Sample type RNA
 
Source name Cardiac muscle sampled 168 hrs post Vehicle Treatment once daily for 14 days
Organism Rattus norvegicus
Characteristics strain: Wistar
gender: male
Treatment protocol Cardiac muscle was isolated from the rat, cut sagitally, scored and placed quickly into RNAlater. After 24 hours at 4C, tissues were moved to -80C for storage until all tissues were harvested.
Extracted molecule total RNA
Extraction protocol Qiagen RNAeasy minikit with Dnase treatment according to manufacturers recommendations
Label biotin
Label protocol Affymetrix One-Cycle Target Labeling Assay using Affymetrix kit P/N 900493
 
Hybridization protocol Standard Affymetrix Protocols
Scan protocol Affymetrix GeneChip Scanner 3000
Data processing GCOS software using MAS5
 
Submission date Jun 24, 2010
Last update date Jun 24, 2010
Contact name Mary Simcox
E-mail(s) msimcox@formatherapeutics.com
Phone 857-209-2853
Organization name Forma Therapeutics
Street address 500 Arsenal St
City Watertown
State/province MA
ZIP/Postal code 02472
Country USA
 
Platform ID GPL1355
Series (1)
GSE22553 Cardiac Effects of Rosiglitazone in Male Wistar Rats

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 388.655 P 0.000662269
AFFX-BioB-M_at 484.393 P 0.000753643
AFFX-BioB-3_at 248.281 P 0.000581214
AFFX-BioC-5_at 714.262 P 0.000169227
AFFX-BioC-3_at 799.02 P 4.42873e-05
AFFX-BioDn-5_at 2818.36 P 5.16732e-05
AFFX-BioDn-3_at 6045.9 P 6.02111e-05
AFFX-CreX-5_at 10417.8 P 5.16732e-05
AFFX-CreX-3_at 10520.6 P 4.42873e-05
AFFX-DapX-5_at 314.754 P 0.000224668
AFFX-DapX-M_at 563.38 P 0.000856509
AFFX-DapX-3_at 680.419 P 8.14279e-05
AFFX-LysX-5_at 50.5385 P 0.000258358
AFFX-LysX-M_at 76.2794 P 0.0113844
AFFX-LysX-3_at 177.272 P 0.000169227
AFFX-PheX-5_at 58.7296 P 0.00556451
AFFX-PheX-M_at 69.247 P 0.0182806
AFFX-PheX-3_at 99.4477 P 0.0020226
AFFX-ThrX-5_at 57.6959 P 0.0113844
AFFX-ThrX-M_at 106.912 P 0.000445901

Total number of rows: 31099

Table truncated, full table size 936 Kbytes.




Supplementary file Size Download File type/resource
GSM559743.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM559743.CHP.gz 262.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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