|
| Status |
Public on Oct 28, 2011 |
| Title |
Blood 166 |
| Sample type |
genomic |
| |
|
| Source name |
blood
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: peripheral blood
disease state: normal
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted using the DNeasy blood and tissue kit according to standard instructions.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina labeling protocol.
|
| |
|
| Hybridization protocol |
Bisulphite-converted DNA was amplified, fragmented and hybridized to the Illumina Infinium Human Methylation27 BeadChip using the standard Illumina protocol.
|
| Scan protocol |
Arrays were imaged using the BeadArray Reader using the standard recommended Illumina scanner setting.
|
| Description |
Blood sample from control patient.
|
| Data processing |
BeadStudio software v3.2. The Sample table values were generated by reporting the raw data (normalization was not recommended by Illumina) and subsetting the full 27,578 loci to 26,486 autosomal probes in order to minimize gender biases in the analysis.
|
| |
|
| Submission date |
Nov 02, 2010 |
| Last update date |
Oct 28, 2011 |
| Contact name |
Graham M Poage |
| Organization name |
Brown University
|
| Street address |
70 Ship St
|
| City |
Providence |
| State/province |
RI |
| ZIP/Postal code |
02903 |
| Country |
USA |
| |
|
| Platform ID |
GPL8490 |
| Series (2) |
| GSE25091 |
Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer: blood controls |
| GSE25093 |
Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer |
|
