|
| Status |
Public on Jun 19, 2023 |
| Title |
Chronic Beryllium Disease 30 |
| Sample type |
genomic |
| |
|
| Source name |
Bronchoalveolar lavage cells from: Chronic Beryllium Disease 30
|
| Organism |
Homo sapiens |
| Characteristics |
diagnosis: CBD
Sex: M
age: 49
race: White
hispanic: No
smoker: Never
current_medications: NA
tlc: 7.6
tlc_percent_predicted: 105
fvc: 5.18
fvc_percent_predicted: 96
fev1: 4.13
fev1_percent_predicted: 98
fev1/fvc: 80
dlco: 28.39
dlco_percent_predicted: 73
bal_cellspermillion: 5
white_blood_cell_count (x 10^6): 62.6
macrophage_percentage: 83.8
lymphocyte_percentage: 15.5
slide: 201118840149
array: R07C01
|
| Treatment protocol |
N/A
|
| Growth protocol |
Cells were stored in RLT buffer at –80°C
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA and RNA were extracted using Qiagen AllPrep DNA/RNA extraction mini kit
|
| Label |
Cy5 and Cy3
|
| Label protocol |
per Manufacturer Instructions
|
| |
|
| Hybridization protocol |
per Manufacturer Instructions
|
| Scan protocol |
per Manufacturer Instructions
|
| Description |
N/A
|
| Data processing |
.idat files were processed using default parameters in the sesame R package.
|
| |
|
| Submission date |
Jun 22, 2022 |
| Last update date |
Jun 20, 2023 |
| Contact name |
Ivana Yang |
| E-mail(s) |
ivana.yang@cuanschutz.edu
|
| Organization name |
University of Colorado - Anschutz Medical Campus
|
| Street address |
12700 E 19th Ave
|
| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
| |
|
| Platform ID |
GPL21145 |
| Series (2) |
| GSE206709 |
Multi-omic signatures of Chronic Beryllium Disease bronchoalveolar lavage cells relate to T cell function and innate immunity [Methylation] |
| GSE206719 |
Multi-omic signatures of Chronic Beryllium Disease bronchoalveolar lavage cells relate to T cell function and innate immunity |
|
