|
Status |
Public on Jun 19, 2023 |
Title |
Beryllium Sensitized 13 |
Sample type |
genomic |
|
|
Source name |
Bronchoalveolar lavage cells from: Beryllium Sensitized 13
|
Organism |
Homo sapiens |
Characteristics |
diagnosis: BeS Sex: M age: 51 race: White hispanic: No smoker: Former current_medications: NA tlc: 7.39 tlc_percent_predicted: 105 fvc: 4.55 fvc_percent_predicted: 87 fev1: 3.38 fev1_percent_predicted: 84 fev1/fvc: 74 dlco: NA dlco_percent_predicted: NA bal_cellspermillion: 9.25 white_blood_cell_count (x 10^6): 36.5 macrophage_percentage: 98.5 lymphocyte_percentage: 1.5 slide: 201125090128 array: R06C01
|
Treatment protocol |
N/A
|
Growth protocol |
Cells were stored in RLT buffer at –80°C
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA and RNA were extracted using Qiagen AllPrep DNA/RNA extraction mini kit
|
Label |
Cy5 and Cy3
|
Label protocol |
per Manufacturer Instructions
|
|
|
Hybridization protocol |
per Manufacturer Instructions
|
Scan protocol |
per Manufacturer Instructions
|
Description |
N/A
|
Data processing |
.idat files were processed using default parameters in the sesame R package.
|
|
|
Submission date |
Jun 22, 2022 |
Last update date |
Jun 20, 2023 |
Contact name |
Ivana Yang |
E-mail(s) |
ivana.yang@cuanschutz.edu
|
Organization name |
University of Colorado - Anschutz Medical Campus
|
Street address |
12700 E 19th Ave
|
City |
Aurora |
State/province |
CO |
ZIP/Postal code |
80045 |
Country |
USA |
|
|
Platform ID |
GPL21145 |
Series (2) |
GSE206709 |
Multi-omic signatures of Chronic Beryllium Disease bronchoalveolar lavage cells relate to T cell function and innate immunity [Methylation] |
GSE206719 |
Multi-omic signatures of Chronic Beryllium Disease bronchoalveolar lavage cells relate to T cell function and innate immunity |
|