|
| Status |
Public on Dec 31, 2011 |
| Title |
dengue Patient_Timepoint3 14 |
| Sample type |
RNA |
| |
|
| Source name |
Human whole blood
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: Patient
collection time: 2 to 5 weeks after symptoms
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from whole blood drawn in pax-gene vacutainer tubes by PAX-gene RNA kit (Qiagen). Quality control was performed with NanoDrop 1000 instrument
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were pared with the Illumina TotalP RNA Amplification Kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Data processing |
The data were analysed in Genespring GX7.3 software. Measurements less than 0.01 was set to 0.0 1. Data was then normalised at the 50th percentile.
|
| |
|
| Submission date |
Apr 05, 2011 |
| Last update date |
Dec 31, 2011 |
| Contact name |
Ahmad Nazri Mohamed Naim |
| E-mail(s) |
mohamedan@gis.a-star.edu.sg
|
| Phone |
65-98547654
|
| Organization name |
Genome institute of Singapore
|
| Department |
Infectious disease
|
| Lab |
lab 1
|
| Street address |
60 Biopolis Street, Genome, #02-01
|
| City |
Singapore |
| ZIP/Postal code |
138672 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL2700 |
| Series (1) |
| GSE28405 |
Genome-wide gene expression analysis of human whole-blood samples in in response to dengue disease |
|
