|
| Status |
Public on Dec 31, 2023 |
| Title |
uninfected tick 3 |
| Sample type |
SRA |
| |
|
| Source name |
hemolymph
|
| Organism |
Rhipicephalus microplus |
| Characteristics |
tissue: hemolymph
cell type: hemocyte
infection: uninfected
|
| Extracted molecule |
total RNA |
| Extraction protocol |
TriZol extraction
Illumina TruSeq mRNA, poly A selected
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
L4P9
RNAseqHemocytes_all_with raw reads count 09182023.xlsx
|
| Data processing |
HiSeq control software HCS 2.2.58 RTA 1.18.64
TopHat v2.0.12 alignment
HTC v 0.6.1 counts
edgeR 3.12.1. DE analysis
Supplementary files format and content: Excel with RefSeq_ID/ baseMean mapped counts /fold change/ log2FoldChange / lfcSE / stat / pvalue / padj
|
| |
|
| Submission date |
Sep 18, 2023 |
| Last update date |
Dec 31, 2023 |
| Contact name |
Massaro Wilson Ueti |
| E-mail(s) |
massaro.utei@usda.gov
|
| Phone |
509-335-6059
|
| Organization name |
USDA ARS Animal Disease Research Unit
|
| Street address |
3003 ADBF Washington State Univ, 3003 ADBF, Grimes Way
|
| City |
Pullman |
| State/province |
Washington |
| ZIP/Postal code |
99164-6630 |
| Country |
USA |
| |
|
| Platform ID |
GPL33773 |
| Series (1) |
| GSE243493 |
Rhipicephalus microplushemocyte innate cellular and humoral immune responses to babesialinfection |
|
| Relations |
| BioSample |
SAMN37446239 |
| SRA |
SRX21818680 |
