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Sample GSM872139 Query DataSets for GSM872139
Status Public on Mar 14, 2012
Title BMM_F2D_19_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 3.96275856532483 -5.265292 14.6814162140464 0.89599 41
ILMN_2956159 13.4026755394071 12395.47 2267.94893939092 0 38
ILMN_2704576 4.76905389516952 4.630785 17.6087488411301 0.1453634 47
ILMN_3135931 13.3818472839267 12139.14 2615.20368997847 0 52
ILMN_2516699 13.9824632190025 19794.38 3848.14185409734 0 32
ILMN_2964873 13.8538136213455 18572.62 3929.72613745437 0 50
ILMN_1377920 13.6909941243974 16375.68 4243.80504711312 0 129
ILMN_2747959 7.36001215261421 117.4692 58.6937203688044 0 34
ILMN_2666018 5.00395788974958 7.965936 19.3524722142246 0.05513784 33
ILMN_2851231 13.0539499344965 10168.86 2431.37125325802 0 38
ILMN_2948086 12.4246780869717 5657.29 1296.56953221761 0 43
ILMN_2675747 12.4374580458286 5658.103 1366.35772745635 0 43
ILMN_1258988 10.3623140299702 1301.392 287.246121148219 0 46
ILMN_2876066 14.1981373709814 26935.48 4469.5505633037 0 44
ILMN_2588052 13.9370770625561 19777.09 5310.45351241605 0 83
ILMN_2658908 4.62023485909124 2.626848 13.340259504189 0.2531328 29
ILMN_2876071 14.0303542221077 22150.59 5121.24258696273 0 51
ILMN_2696977 13.2419685347263 11346.32 2412.31015329048 0 47
ILMN_2740432 12.6714769690571 7098.02 2132.38785437277 0 34
ILMN_3126986 12.9082577234049 8712.555 1630.69800121125 0 37

Total number of rows: 25697

Table truncated, full table size 1658 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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