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Sample GSM872160 Query DataSets for GSM872160
Status Public on Mar 14, 2012
Title BMM_F2A_123_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.78528434475317 27.09091 9.14713176067154 0.1090226 46
ILMN_2956159 13.0370662485922 5439.312 1299.2876869208 0 34
ILMN_2704576 4.17192759079394 22.99313 6.42517880026015 0.7017544 50
ILMN_3135931 13.61103989448 7835.908 1737.86973417273 0 35
ILMN_2516699 13.8947964597709 10081.08 2664.67850861507 0 44
ILMN_2964873 14.1981373709814 11888.15 2481.09375054957 0 37
ILMN_1377920 13.7532623321719 9451.252 2592.614 0 100
ILMN_2747959 5.60967192422508 37.11405 12.1111877429133 0.001253133 37
ILMN_2666018 5.32185053213072 32.88554 11.0173043133739 0.002506266 47
ILMN_2851231 13.6651114672082 8100.483 2033.56116427212 0 42
ILMN_2948086 12.7617823937971 4444.599 1238.10097704731 0 38
ILMN_2675747 12.5073897372045 3673.813 1178.26217022939 0 42
ILMN_1258988 12.1972056436141 2763.037 689.556628436911 0 43
ILMN_2876066 14.0303542221077 11413.43 2576.77944408581 0 45
ILMN_2588052 14.1316861494688 11755.06 3047.55453267266 0 85
ILMN_2658908 4.45143356973817 24.63374 9.50713054420486 0.3947369 33
ILMN_2876071 13.9824632190025 11256.49 3760.34500306298 0 31
ILMN_2696977 13.0886597842807 5606.806 1778.36871350952 0 38
ILMN_2740432 11.5276710604852 1819.112 787.033898197123 0 34
ILMN_3126986 12.5573599928081 3812.803 909.57021947113 0 39

Total number of rows: 25697

Table truncated, full table size 1646 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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